miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21410 3' -56.6 NC_004812.1 + 71783 0.66 0.906578
Target:  5'- ----gCGGGGGGGCGGgg-GUCGc-- -3'
miRNA:   3'- ggaggGCCCCCCCGUCauaCAGUuug -5'
21410 3' -56.6 NC_004812.1 + 70111 0.66 0.906578
Target:  5'- gCUUCCCGGGGGcccGCAGcggcuccGUCAAc- -3'
miRNA:   3'- -GGAGGGCCCCCc--CGUCaua----CAGUUug -5'
21410 3' -56.6 NC_004812.1 + 25438 0.66 0.900356
Target:  5'- -gUCCCGGGGGcgggguuuaGGCAGccgugGUGgucgcgCGGGCa -3'
miRNA:   3'- ggAGGGCCCCC---------CCGUCa----UACa-----GUUUG- -5'
21410 3' -56.6 NC_004812.1 + 59512 0.66 0.900356
Target:  5'- gCC-CCCGGcggacaGGGGGCGGUA-GcCGAGg -3'
miRNA:   3'- -GGaGGGCC------CCCCCGUCAUaCaGUUUg -5'
21410 3' -56.6 NC_004812.1 + 67798 0.66 0.900356
Target:  5'- gCUUCgGGGGGGGCGGgcccggCAGc- -3'
miRNA:   3'- gGAGGgCCCCCCCGUCauaca-GUUug -5'
21410 3' -56.6 NC_004812.1 + 72120 0.66 0.894561
Target:  5'- uCCUCUCGGGuGGGCGGggagacucuagCGAGCc -3'
miRNA:   3'- -GGAGGGCCCcCCCGUCauaca------GUUUG- -5'
21410 3' -56.6 NC_004812.1 + 112052 0.66 0.893906
Target:  5'- aUUUUCGGGGaGGGCccGUccGUCGAGCc -3'
miRNA:   3'- gGAGGGCCCC-CCCGu-CAuaCAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 78030 0.66 0.88723
Target:  5'- aCCUCggUGGGGGGGguGgcccgCAGGCg -3'
miRNA:   3'- -GGAGg-GCCCCCCCguCauacaGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 16503 0.66 0.88723
Target:  5'- aCCggCCGGGGGGcGCGGgggcgAUGcgcUCAcGCg -3'
miRNA:   3'- -GGagGGCCCCCC-CGUCa----UAC---AGUuUG- -5'
21410 3' -56.6 NC_004812.1 + 76419 0.66 0.88723
Target:  5'- aCCUugaaCCCGGaGGGGCGGUcucGUG-CAuGCg -3'
miRNA:   3'- -GGA----GGGCCcCCCCGUCA---UACaGUuUG- -5'
21410 3' -56.6 NC_004812.1 + 69234 0.66 0.88723
Target:  5'- gCC-CCCGGGGGGGCGaucacgGcCGAc- -3'
miRNA:   3'- -GGaGGGCCCCCCCGUcaua--CaGUUug -5'
21410 3' -56.6 NC_004812.1 + 59089 0.66 0.880334
Target:  5'- cCCcCCCGGgcugcGGGGGUGGUAg--CAGAUg -3'
miRNA:   3'- -GGaGGGCC-----CCCCCGUCAUacaGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 133390 0.66 0.880334
Target:  5'- aCCcCCCGGGugcagaagugGGcGGCgaAGUAcGUCAGACa -3'
miRNA:   3'- -GGaGGGCCC----------CC-CCG--UCAUaCAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 99089 0.66 0.880334
Target:  5'- uCCgCgCGaGGGGGGCGGgGUGUUggGg -3'
miRNA:   3'- -GGaGgGC-CCCCCCGUCaUACAGuuUg -5'
21410 3' -56.6 NC_004812.1 + 86593 0.66 0.87322
Target:  5'- aCCcgCCCGcGGcGGGGCcaugGUGUCGAucGCa -3'
miRNA:   3'- -GGa-GGGC-CC-CCCCGuca-UACAGUU--UG- -5'
21410 3' -56.6 NC_004812.1 + 102955 0.67 0.86885
Target:  5'- ----gCGGGGGGGCgucggggucguagucGGUGUcGUCGGGCa -3'
miRNA:   3'- ggaggGCCCCCCCG---------------UCAUA-CAGUUUG- -5'
21410 3' -56.6 NC_004812.1 + 63044 0.67 0.865894
Target:  5'- gCC-CCCGGGGaGGCGGgggcGUCuGGCu -3'
miRNA:   3'- -GGaGGGCCCCcCCGUCaua-CAGuUUG- -5'
21410 3' -56.6 NC_004812.1 + 16446 0.67 0.86515
Target:  5'- cCCUCCCacgcaucgaguuuGGGGuGGGCGGgucGUGUUuccGCc -3'
miRNA:   3'- -GGAGGG-------------CCCC-CCCGUCa--UACAGuu-UG- -5'
21410 3' -56.6 NC_004812.1 + 8618 0.67 0.858362
Target:  5'- gCCUCCCGGuaauggacgcGaGGGGCGGg--GgagCGGGCg -3'
miRNA:   3'- -GGAGGGCC----------C-CCCCGUCauaCa--GUUUG- -5'
21410 3' -56.6 NC_004812.1 + 39519 0.67 0.858362
Target:  5'- gCCUCCCGGuaauggacgcGaGGGGCGGg--GgagCGGGCg -3'
miRNA:   3'- -GGAGGGCC----------C-CCCCGUCauaCa--GUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.