miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21412 3' -53 NC_004812.1 + 119375 0.66 0.981905
Target:  5'- cGCCCCCUGcugccccucCUgcccggggcccccCGCGUGCCcgggggCGCCg -3'
miRNA:   3'- -CGGGGGACaaa------GA-------------GUGCAUGGa-----GUGG- -5'
21412 3' -53 NC_004812.1 + 64850 0.66 0.977713
Target:  5'- gGCCgCCCaca-UCUCGCGgGCCUCuuCCu -3'
miRNA:   3'- -CGG-GGGacaaAGAGUGCaUGGAGu-GG- -5'
21412 3' -53 NC_004812.1 + 19121 0.66 0.98
Target:  5'- gGCCCCCgccagCUCGgCGUgggcgGCCagCGCCg -3'
miRNA:   3'- -CGGGGGacaaaGAGU-GCA-----UGGa-GUGG- -5'
21412 3' -53 NC_004812.1 + 20547 0.66 0.98
Target:  5'- cCCCCCacagGaUUCUgaagagcaucagCGCGUgguccGCCUCGCCg -3'
miRNA:   3'- cGGGGGa---CaAAGA------------GUGCA-----UGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 50043 0.66 0.9817
Target:  5'- gGCCCCCUGgcgauuaACGUggACCaccgCGCCc -3'
miRNA:   3'- -CGGGGGACaaagag-UGCA--UGGa---GUGG- -5'
21412 3' -53 NC_004812.1 + 23193 0.66 0.982108
Target:  5'- uGCaCUUCgcGUgUCUgACGUACUUCGCCg -3'
miRNA:   3'- -CG-GGGGa-CAaAGAgUGCAUGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 133247 0.66 0.982108
Target:  5'- cGCgCCCgucGUccUCUCGCGaACCcCACCc -3'
miRNA:   3'- -CGgGGGa--CAa-AGAGUGCaUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 51002 0.66 0.98329
Target:  5'- aGUCCCCUGgaagcgcagaUCGCcgcgcuggucgGUGCCaUCGCCg -3'
miRNA:   3'- -CGGGGGACaaag------AGUG-----------CAUGG-AGUGG- -5'
21412 3' -53 NC_004812.1 + 121598 0.66 0.975238
Target:  5'- gGCCCCCgccgagCUCGCcgACCUCAa- -3'
miRNA:   3'- -CGGGGGacaaa-GAGUGcaUGGAGUgg -5'
21412 3' -53 NC_004812.1 + 12555 0.66 0.977713
Target:  5'- gGCCCCCgg---Cg-GCGUGCCgcCGCCg -3'
miRNA:   3'- -CGGGGGacaaaGagUGCAUGGa-GUGG- -5'
21412 3' -53 NC_004812.1 + 120875 0.66 0.975238
Target:  5'- gGCCCCgcagggggCUGggUCggggcCGCGUGCCgaccccgCGCCc -3'
miRNA:   3'- -CGGGG--------GACaaAGa----GUGCAUGGa------GUGG- -5'
21412 3' -53 NC_004812.1 + 93363 0.66 0.972845
Target:  5'- cGCCUCCUcgacccccagCAUGUGCgUCACCg -3'
miRNA:   3'- -CGGGGGAcaaaga----GUGCAUGgAGUGG- -5'
21412 3' -53 NC_004812.1 + 9211 0.66 0.972569
Target:  5'- -aCCCCUG-UUC-CGCGUgaucgucgaaGCCUC-CCg -3'
miRNA:   3'- cgGGGGACaAAGaGUGCA----------UGGAGuGG- -5'
21412 3' -53 NC_004812.1 + 151776 0.66 0.975238
Target:  5'- gGCCCCgcagggggCUGggUCggggcCGCGUGCCgaccccgCGCCc -3'
miRNA:   3'- -CGGGG--------GACaaAGa----GUGCAUGGa------GUGG- -5'
21412 3' -53 NC_004812.1 + 93815 0.66 0.975238
Target:  5'- aGCCCCCcgGggaCUCGCGcaggGCCgcgGCCa -3'
miRNA:   3'- -CGGGGGa-CaaaGAGUGCa---UGGag-UGG- -5'
21412 3' -53 NC_004812.1 + 9518 0.66 0.984044
Target:  5'- cGCCaCCUGUUUCgCGCGUucggcugcggagGCCcCGCUu -3'
miRNA:   3'- -CGGgGGACAAAGaGUGCA------------UGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 101975 0.66 0.977713
Target:  5'- aCCCCCgugGUgagCcCGCGgGCCUCuCCg -3'
miRNA:   3'- cGGGGGa--CAaa-GaGUGCaUGGAGuGG- -5'
21412 3' -53 NC_004812.1 + 106509 0.66 0.972845
Target:  5'- gGCCCCCggGggUCguccaccacggccagCACGcGCCcCACCu -3'
miRNA:   3'- -CGGGGGa-CaaAGa--------------GUGCaUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 85682 0.66 0.972569
Target:  5'- cGCCCgCCUGUaUCgCugGcgGCCagACCu -3'
miRNA:   3'- -CGGG-GGACAaAGaGugCa-UGGagUGG- -5'
21412 3' -53 NC_004812.1 + 137749 0.66 0.972569
Target:  5'- gGCUCCCgccucgUUUCGCaGUACCgcCACCg -3'
miRNA:   3'- -CGGGGGacaa--AGAGUG-CAUGGa-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.