miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21412 3' -53 NC_004812.1 + 92189 0.68 0.943458
Target:  5'- gGCCCUgucgCUGUUUCggcccUCGCccucaGCCUCGCCu -3'
miRNA:   3'- -CGGGG----GACAAAG-----AGUGca---UGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 97102 0.69 0.923286
Target:  5'- cGCCCCCUGUccgC-CGgGgGCCgCGCCg -3'
miRNA:   3'- -CGGGGGACAaa-GaGUgCaUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 13089 0.69 0.928693
Target:  5'- cGCCCCCaUGcg-CUCGuacgccCGggcccGCCUCGCCg -3'
miRNA:   3'- -CGGGGG-ACaaaGAGU------GCa----UGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 104254 0.69 0.928693
Target:  5'- cGCCCCCaGaUUUCUaACG-ACC-CGCCg -3'
miRNA:   3'- -CGGGGGaC-AAAGAgUGCaUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 147967 0.68 0.933858
Target:  5'- cGCCCCCgcggcgCUC-CGUGCUcauggCGCCg -3'
miRNA:   3'- -CGGGGGacaaa-GAGuGCAUGGa----GUGG- -5'
21412 3' -53 NC_004812.1 + 94086 0.68 0.933858
Target:  5'- -aCCCCUGccgcccgCUCGCGUGcgcCCUgGCCc -3'
miRNA:   3'- cgGGGGACaaa----GAGUGCAU---GGAgUGG- -5'
21412 3' -53 NC_004812.1 + 4019 0.68 0.943458
Target:  5'- cGCCUCCUccgcGUccUCUCGCGccGCC-CGCCg -3'
miRNA:   3'- -CGGGGGA----CAa-AGAGUGCa-UGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 126253 0.68 0.943458
Target:  5'- uCCCCCgccg---CGCGcGCCUCGCCu -3'
miRNA:   3'- cGGGGGacaaagaGUGCaUGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 91429 0.68 0.943458
Target:  5'- cGCCCCgaGUUgaugUagGCGUACCccagCGCCc -3'
miRNA:   3'- -CGGGGgaCAAa---GagUGCAUGGa---GUGG- -5'
21412 3' -53 NC_004812.1 + 10426 0.69 0.911742
Target:  5'- aCCCCCgcg-UCcacCGCGU-CCUCACCu -3'
miRNA:   3'- cGGGGGacaaAGa--GUGCAuGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 45130 0.69 0.911742
Target:  5'- uGUCCCCagagGggUC-CACGggggGCCUCACg -3'
miRNA:   3'- -CGGGGGa---CaaAGaGUGCa---UGGAGUGg -5'
21412 3' -53 NC_004812.1 + 17274 0.69 0.905608
Target:  5'- cGCCUCCgccuucGUgaaaaUCUCgGCGUGgCUCGCCg -3'
miRNA:   3'- -CGGGGGa-----CAa----AGAG-UGCAUgGAGUGG- -5'
21412 3' -53 NC_004812.1 + 105045 0.72 0.778273
Target:  5'- cGCCUCCgg---CUgCGCGUGCgCUCGCCg -3'
miRNA:   3'- -CGGGGGacaaaGA-GUGCAUG-GAGUGG- -5'
21412 3' -53 NC_004812.1 + 135996 0.72 0.794924
Target:  5'- cGCCCCCgagacgcagUCgcaggcgCGCGU-CCUCGCCa -3'
miRNA:   3'- -CGGGGGacaa-----AGa------GUGCAuGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 131237 0.71 0.840126
Target:  5'- uCCCCCUGUgUCUCucuccgcacacACGcGCCUCcgGCCc -3'
miRNA:   3'- cGGGGGACAaAGAG-----------UGCaUGGAG--UGG- -5'
21412 3' -53 NC_004812.1 + 120837 0.7 0.885785
Target:  5'- gGCCUCgUUGUUUCUCGCGcggGCCgcgGCCc -3'
miRNA:   3'- -CGGGG-GACAAAGAGUGCa--UGGag-UGG- -5'
21412 3' -53 NC_004812.1 + 82344 0.7 0.892626
Target:  5'- cGCCCCCcGUgaggCcCGCG-GCCUCGCa -3'
miRNA:   3'- -CGGGGGaCAaa--GaGUGCaUGGAGUGg -5'
21412 3' -53 NC_004812.1 + 2429 0.7 0.899235
Target:  5'- cGCCCCCcugcgGUUUCUCAUcc-CCgauaggCGCCg -3'
miRNA:   3'- -CGGGGGa----CAAAGAGUGcauGGa-----GUGG- -5'
21412 3' -53 NC_004812.1 + 20224 0.69 0.905608
Target:  5'- cGCCCCCUGcg--UCAUGgGCCagGCCu -3'
miRNA:   3'- -CGGGGGACaaagAGUGCaUGGagUGG- -5'
21412 3' -53 NC_004812.1 + 94430 0.69 0.905608
Target:  5'- cGCCCCCUGU---UCGCGgcCCcCcgGCCg -3'
miRNA:   3'- -CGGGGGACAaagAGUGCauGGaG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.