miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21412 3' -53 NC_004812.1 + 745 0.68 0.943458
Target:  5'- uCCCCCgccg---CGCGcGCCUCGCCu -3'
miRNA:   3'- cGGGGGacaaagaGUGCaUGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 987 0.67 0.95981
Target:  5'- cGCCCCCga--UCUCACuagGCCU-GCCc -3'
miRNA:   3'- -CGGGGGacaaAGAGUGca-UGGAgUGG- -5'
21412 3' -53 NC_004812.1 + 2429 0.7 0.899235
Target:  5'- cGCCCCCcugcgGUUUCUCAUcc-CCgauaggCGCCg -3'
miRNA:   3'- -CGGGGGa----CAAAGAGUGcauGGa-----GUGG- -5'
21412 3' -53 NC_004812.1 + 4019 0.68 0.943458
Target:  5'- cGCCUCCUccgcGUccUCUCGCGccGCC-CGCCg -3'
miRNA:   3'- -CGGGGGA----CAa-AGAGUGCa-UGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 5729 0.71 0.840126
Target:  5'- uCCCCCUGUgUCUCucuccgcacacACGcGCCUCcgGCCc -3'
miRNA:   3'- cGGGGGACAaAGAG-----------UGCaUGGAG--UGG- -5'
21412 3' -53 NC_004812.1 + 7739 0.66 0.982108
Target:  5'- cGCgCCCgucGUccUCUCGCGaACCcCACCc -3'
miRNA:   3'- -CGgGGGa--CAa-AGAGUGCaUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 9211 0.66 0.972569
Target:  5'- -aCCCCUG-UUC-CGCGUgaucgucgaaGCCUC-CCg -3'
miRNA:   3'- cgGGGGACaAAGaGUGCA----------UGGAGuGG- -5'
21412 3' -53 NC_004812.1 + 9518 0.66 0.984044
Target:  5'- cGCCaCCUGUUUCgCGCGUucggcugcggagGCCcCGCUu -3'
miRNA:   3'- -CGGgGGACAAAGaGUGCA------------UGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 10426 0.69 0.911742
Target:  5'- aCCCCCgcg-UCcacCGCGU-CCUCACCu -3'
miRNA:   3'- cGGGGGacaaAGa--GUGCAuGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 10724 0.68 0.947899
Target:  5'- cGUUCCCUccacgCUCGCGguCCUCGCCu -3'
miRNA:   3'- -CGGGGGAcaaa-GAGUGCauGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 12555 0.66 0.977713
Target:  5'- gGCCCCCgg---Cg-GCGUGCCgcCGCCg -3'
miRNA:   3'- -CGGGGGacaaaGagUGCAUGGa-GUGG- -5'
21412 3' -53 NC_004812.1 + 13089 0.69 0.928693
Target:  5'- cGCCCCCaUGcg-CUCGuacgccCGggcccGCCUCGCCg -3'
miRNA:   3'- -CGGGGG-ACaaaGAGU------GCa----UGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 17274 0.69 0.905608
Target:  5'- cGCCUCCgccuucGUgaaaaUCUCgGCGUGgCUCGCCg -3'
miRNA:   3'- -CGGGGGa-----CAa----AGAG-UGCAUgGAGUGG- -5'
21412 3' -53 NC_004812.1 + 19121 0.66 0.98
Target:  5'- gGCCCCCgccagCUCGgCGUgggcgGCCagCGCCg -3'
miRNA:   3'- -CGGGGGacaaaGAGU-GCA-----UGGa-GUGG- -5'
21412 3' -53 NC_004812.1 + 19440 0.69 0.928693
Target:  5'- cGCCUCgUGcacggagCUCGCGUACCacccCGCCu -3'
miRNA:   3'- -CGGGGgACaaa----GAGUGCAUGGa---GUGG- -5'
21412 3' -53 NC_004812.1 + 20224 0.69 0.905608
Target:  5'- cGCCCCCUGcg--UCAUGgGCCagGCCu -3'
miRNA:   3'- -CGGGGGACaaagAGUGCaUGGagUGG- -5'
21412 3' -53 NC_004812.1 + 20547 0.66 0.98
Target:  5'- cCCCCCacagGaUUCUgaagagcaucagCGCGUgguccGCCUCGCCg -3'
miRNA:   3'- cGGGGGa---CaAAGA------------GUGCA-----UGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 23193 0.66 0.982108
Target:  5'- uGCaCUUCgcGUgUCUgACGUACUUCGCCg -3'
miRNA:   3'- -CG-GGGGa-CAaAGAgUGCAUGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 27077 0.67 0.966618
Target:  5'- cGCCgCCgaGUgcCUCACGgccUGCCgCGCCg -3'
miRNA:   3'- -CGG-GGgaCAaaGAGUGC---AUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 28695 0.67 0.966618
Target:  5'- uGCCCuuCCUGgaUUUCGCG-ACCgcCGCCc -3'
miRNA:   3'- -CGGG--GGACaaAGAGUGCaUGGa-GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.