miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21412 3' -53 NC_004812.1 + 113050 1.16 0.002431
Target:  5'- cGCCCCCUGUUUCUCACGUACCUCACCg -3'
miRNA:   3'- -CGGGGGACAAAGAGUGCAUGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 49001 0.76 0.607296
Target:  5'- cGCCgCCUGg--CggaCACGUGCCUgGCCa -3'
miRNA:   3'- -CGGgGGACaaaGa--GUGCAUGGAgUGG- -5'
21412 3' -53 NC_004812.1 + 139918 0.74 0.669172
Target:  5'- cCCCCCUGUUUCccuUCcUGaccGCCUCACCc -3'
miRNA:   3'- cGGGGGACAAAG---AGuGCa--UGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 142054 0.73 0.759269
Target:  5'- uGCCCCUgcgggaGUUUCccuUCGCGgucUACCUCAUCa -3'
miRNA:   3'- -CGGGGGa-----CAAAG---AGUGC---AUGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 105045 0.72 0.778273
Target:  5'- cGCCUCCgg---CUgCGCGUGCgCUCGCCg -3'
miRNA:   3'- -CGGGGGacaaaGA-GUGCAUG-GAGUGG- -5'
21412 3' -53 NC_004812.1 + 126192 0.72 0.787581
Target:  5'- cGCgCCCUGaccUUCACGUGCCUgaaggcCGCCg -3'
miRNA:   3'- -CGgGGGACaaaGAGUGCAUGGA------GUGG- -5'
21412 3' -53 NC_004812.1 + 135996 0.72 0.794924
Target:  5'- cGCCCCCgagacgcagUCgcaggcgCGCGU-CCUCGCCa -3'
miRNA:   3'- -CGGGGGacaa-----AGa------GUGCAuGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 139905 0.71 0.823296
Target:  5'- gGCCCCgCgGUcgCUCGCGcACC-CGCCg -3'
miRNA:   3'- -CGGGG-GaCAaaGAGUGCaUGGaGUGG- -5'
21412 3' -53 NC_004812.1 + 54006 0.71 0.823296
Target:  5'- cCCCCCgcgcgUCguacgcgCACGUGCCUCcaGCCg -3'
miRNA:   3'- cGGGGGacaa-AGa------GUGCAUGGAG--UGG- -5'
21412 3' -53 NC_004812.1 + 101919 0.71 0.831803
Target:  5'- cCCUCCUGgccCUCGCccuCCUCGCCg -3'
miRNA:   3'- cGGGGGACaaaGAGUGcauGGAGUGG- -5'
21412 3' -53 NC_004812.1 + 131237 0.71 0.840126
Target:  5'- uCCCCCUGUgUCUCucuccgcacacACGcGCCUCcgGCCc -3'
miRNA:   3'- cGGGGGACAaAGAG-----------UGCaUGGAG--UGG- -5'
21412 3' -53 NC_004812.1 + 5729 0.71 0.840126
Target:  5'- uCCCCCUGUgUCUCucuccgcacacACGcGCCUCcgGCCc -3'
miRNA:   3'- cGGGGGACAaAGAG-----------UGCaUGGAG--UGG- -5'
21412 3' -53 NC_004812.1 + 92414 0.71 0.840126
Target:  5'- gGCgCCCUGguaUCcCACGUGCCggccccCGCCg -3'
miRNA:   3'- -CGgGGGACaa-AGaGUGCAUGGa-----GUGG- -5'
21412 3' -53 NC_004812.1 + 104015 0.7 0.878716
Target:  5'- cGCCgCCCUGU---UCGCGgGCCUCuacuCCu -3'
miRNA:   3'- -CGG-GGGACAaagAGUGCaUGGAGu---GG- -5'
21412 3' -53 NC_004812.1 + 83104 0.7 0.878716
Target:  5'- gGCCUCCUGUUcggCACGcGCCUgGCg -3'
miRNA:   3'- -CGGGGGACAAagaGUGCaUGGAgUGg -5'
21412 3' -53 NC_004812.1 + 120837 0.7 0.885785
Target:  5'- gGCCUCgUUGUUUCUCGCGcggGCCgcgGCCc -3'
miRNA:   3'- -CGGGG-GACAAAGAGUGCa--UGGag-UGG- -5'
21412 3' -53 NC_004812.1 + 151738 0.7 0.885785
Target:  5'- gGCCUCgUUGUUUCUCGCGcggGCCgcgGCCc -3'
miRNA:   3'- -CGGGG-GACAAAGAGUGCa--UGGag-UGG- -5'
21412 3' -53 NC_004812.1 + 82344 0.7 0.892626
Target:  5'- cGCCCCCcGUgaggCcCGCG-GCCUCGCa -3'
miRNA:   3'- -CGGGGGaCAaa--GaGUGCaUGGAGUGg -5'
21412 3' -53 NC_004812.1 + 121918 0.7 0.892626
Target:  5'- cGUCgCCUGg--CUCACGcacGCCUCGCa -3'
miRNA:   3'- -CGGgGGACaaaGAGUGCa--UGGAGUGg -5'
21412 3' -53 NC_004812.1 + 56618 0.7 0.892626
Target:  5'- aGCUCCCUGaggCUgGCGagcUGCCUgGCCc -3'
miRNA:   3'- -CGGGGGACaaaGAgUGC---AUGGAgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.