miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21420 5' -55 NC_004812.1 + 22927 0.65 0.935732
Target:  5'- -cGCcCCCGcGccUGGACGCCcagagucuguggGCACCUACg -3'
miRNA:   3'- uuUGaGGGC-C--AUCUGUGG------------CGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 91772 0.65 0.935732
Target:  5'- cGAACaCCCGGaGGAgGCUGCACagGCa -3'
miRNA:   3'- -UUUGaGGGCCaUCUgUGGCGUGgaUG- -5'
21420 5' -55 NC_004812.1 + 91491 0.65 0.935732
Target:  5'- cAGACcgaCCGGcAGGgGCCGCGCCaGCc -3'
miRNA:   3'- -UUUGag-GGCCaUCUgUGGCGUGGaUG- -5'
21420 5' -55 NC_004812.1 + 80879 0.65 0.935732
Target:  5'- --gUUCCgGGUGGACACggagccgcuggCGCGgCUGCu -3'
miRNA:   3'- uuuGAGGgCCAUCUGUG-----------GCGUgGAUG- -5'
21420 5' -55 NC_004812.1 + 96946 0.65 0.935732
Target:  5'- ----aCCUGG-AGACGCgGCacGCCUGCg -3'
miRNA:   3'- uuugaGGGCCaUCUGUGgCG--UGGAUG- -5'
21420 5' -55 NC_004812.1 + 47399 0.66 0.91381
Target:  5'- -cGC-CCCGccgGGGCACCGUACCa-- -3'
miRNA:   3'- uuUGaGGGCca-UCUGUGGCGUGGaug -5'
21420 5' -55 NC_004812.1 + 142238 0.66 0.925265
Target:  5'- ----aCCUGGUGcGcCGCCGCGCCcGCg -3'
miRNA:   3'- uuugaGGGCCAU-CuGUGGCGUGGaUG- -5'
21420 5' -55 NC_004812.1 + 86871 0.66 0.913212
Target:  5'- --gUUCCUGGgcGACGCCgGCaagcgcgaccccaGCCUGCu -3'
miRNA:   3'- uuuGAGGGCCauCUGUGG-CG-------------UGGAUG- -5'
21420 5' -55 NC_004812.1 + 81389 0.66 0.91381
Target:  5'- cGugUCCUGGUAGGCGgCGCAgUa-- -3'
miRNA:   3'- uUugAGGGCCAUCUGUgGCGUgGaug -5'
21420 5' -55 NC_004812.1 + 13304 0.66 0.91381
Target:  5'- -uGCgcagCCUGGUGGuCACCGCgAUCUGg -3'
miRNA:   3'- uuUGa---GGGCCAUCuGUGGCG-UGGAUg -5'
21420 5' -55 NC_004812.1 + 67143 0.66 0.907715
Target:  5'- cGGACgaccucggCCCGG-AGGCGCCGCaggGCCaGCc -3'
miRNA:   3'- -UUUGa-------GGGCCaUCUGUGGCG---UGGaUG- -5'
21420 5' -55 NC_004812.1 + 24493 0.66 0.907715
Target:  5'- -cGCUCCUGGacgggGGGCccCCGCGCCg-- -3'
miRNA:   3'- uuUGAGGGCCa----UCUGu-GGCGUGGaug -5'
21420 5' -55 NC_004812.1 + 454 0.66 0.907715
Target:  5'- -cGCgagCCCGGgccGcCGgCGCGCCUGCg -3'
miRNA:   3'- uuUGa--GGGCCau-CuGUgGCGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 143369 0.66 0.919661
Target:  5'- --cCUCCCGGUAcgagcuGACgACCGCGCg--- -3'
miRNA:   3'- uuuGAGGGCCAU------CUG-UGGCGUGgaug -5'
21420 5' -55 NC_004812.1 + 58928 0.66 0.930622
Target:  5'- gAAGCcggUCUCGGcGGGgGCCGCcugGCCUGCc -3'
miRNA:   3'- -UUUG---AGGGCCaUCUgUGGCG---UGGAUG- -5'
21420 5' -55 NC_004812.1 + 67332 0.66 0.925265
Target:  5'- gGGGCUCCgCGcc--GCGCCGCgGCCUGCg -3'
miRNA:   3'- -UUUGAGG-GCcaucUGUGGCG-UGGAUG- -5'
21420 5' -55 NC_004812.1 + 28806 0.66 0.91381
Target:  5'- -uGCUCgagCCGGaccccGACGCCGCGCCg-- -3'
miRNA:   3'- uuUGAG---GGCCau---CUGUGGCGUGGaug -5'
21420 5' -55 NC_004812.1 + 125592 0.66 0.925265
Target:  5'- cGGGCUCCCGGgcGGgcucccggcccCGCgCGCGCCccgGCc -3'
miRNA:   3'- -UUUGAGGGCCauCU-----------GUG-GCGUGGa--UG- -5'
21420 5' -55 NC_004812.1 + 137493 0.66 0.925265
Target:  5'- gGGGCUCCUGGUcaACcCCGgCGCaCUACg -3'
miRNA:   3'- -UUUGAGGGCCAucUGuGGC-GUG-GAUG- -5'
21420 5' -55 NC_004812.1 + 31355 0.66 0.907715
Target:  5'- -cGCgagCCCGGgccGcCGgCGCGCCUGCg -3'
miRNA:   3'- uuUGa--GGGCCau-CuGUgGCGUGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.