miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21420 5' -55 NC_004812.1 + 104802 1.06 0.004729
Target:  5'- gAAACUCCCGGUAGACACCGCACCUACc -3'
miRNA:   3'- -UUUGAGGGCCAUCUGUGGCGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 68453 0.82 0.188987
Target:  5'- gGGGCUCCCGGUGGugGCCGCGgCg-- -3'
miRNA:   3'- -UUUGAGGGCCAUCugUGGCGUgGaug -5'
21420 5' -55 NC_004812.1 + 118229 0.82 0.19881
Target:  5'- cGAGCUCCCGGcGGGCcccGCCGCccGCCUGCa -3'
miRNA:   3'- -UUUGAGGGCCaUCUG---UGGCG--UGGAUG- -5'
21420 5' -55 NC_004812.1 + 54151 0.77 0.386884
Target:  5'- uGGGCUCCCGGcggcgGGACacguACCGCGCCcGCg -3'
miRNA:   3'- -UUUGAGGGCCa----UCUG----UGGCGUGGaUG- -5'
21420 5' -55 NC_004812.1 + 19266 0.76 0.412868
Target:  5'- cAGCUgCCGGgcGAgCGCCGuCACCUGCg -3'
miRNA:   3'- uUUGAgGGCCauCU-GUGGC-GUGGAUG- -5'
21420 5' -55 NC_004812.1 + 77768 0.75 0.477456
Target:  5'- cGGGCUCCuCGGgGGACACCGcCGCC-ACg -3'
miRNA:   3'- -UUUGAGG-GCCaUCUGUGGC-GUGGaUG- -5'
21420 5' -55 NC_004812.1 + 144782 0.74 0.496819
Target:  5'- -uGCUCCCGG-GGACACCGUccacACCgACg -3'
miRNA:   3'- uuUGAGGGCCaUCUGUGGCG----UGGaUG- -5'
21420 5' -55 NC_004812.1 + 79462 0.74 0.516527
Target:  5'- cGGGCUgCCGGccgAGACGCgGCGCCUGg -3'
miRNA:   3'- -UUUGAgGGCCa--UCUGUGgCGUGGAUg -5'
21420 5' -55 NC_004812.1 + 37102 0.72 0.660295
Target:  5'- gGGGCgCCCGGcggcccgcGGACGCCGCcCCUGCc -3'
miRNA:   3'- -UUUGaGGGCCa-------UCUGUGGCGuGGAUG- -5'
21420 5' -55 NC_004812.1 + 6201 0.72 0.660295
Target:  5'- gGGGCgCCCGGcggcccgcGGACGCCGCcCCUGCc -3'
miRNA:   3'- -UUUGaGGGCCa-------UCUGUGGCGuGGAUG- -5'
21420 5' -55 NC_004812.1 + 75164 0.71 0.680976
Target:  5'- gAGGCUCUCGGccucGCuCCGCGCCUGCc -3'
miRNA:   3'- -UUUGAGGGCCauc-UGuGGCGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 65397 0.71 0.680976
Target:  5'- -cGCUCCgCGaGcUGGACGCCGCGCCc-- -3'
miRNA:   3'- uuUGAGG-GC-C-AUCUGUGGCGUGGaug -5'
21420 5' -55 NC_004812.1 + 49191 0.71 0.680976
Target:  5'- -cGCggCCGGUGGGCcugGCCGCACCcGCc -3'
miRNA:   3'- uuUGagGGCCAUCUG---UGGCGUGGaUG- -5'
21420 5' -55 NC_004812.1 + 46233 0.71 0.680976
Target:  5'- cAAACUCCCGGUccAGcaGCACCGCcuguuggaucACCcGCg -3'
miRNA:   3'- -UUUGAGGGCCA--UC--UGUGGCG----------UGGaUG- -5'
21420 5' -55 NC_004812.1 + 31403 0.71 0.691259
Target:  5'- cGAGCaggaCCGGcAGGCGCCGCGCCa-- -3'
miRNA:   3'- -UUUGag--GGCCaUCUGUGGCGUGGaug -5'
21420 5' -55 NC_004812.1 + 41955 0.71 0.691259
Target:  5'- ----aCCCGGUGGcGgGCCGCACCgACg -3'
miRNA:   3'- uuugaGGGCCAUC-UgUGGCGUGGaUG- -5'
21420 5' -55 NC_004812.1 + 111423 0.71 0.701491
Target:  5'- -cGCUCCCGGgccuggguGACGCaCGCGCCc-- -3'
miRNA:   3'- uuUGAGGGCCau------CUGUG-GCGUGGaug -5'
21420 5' -55 NC_004812.1 + 82531 0.71 0.711662
Target:  5'- gAGGC-CCCGGgAGGCGCCGC-CCgugGCc -3'
miRNA:   3'- -UUUGaGGGCCaUCUGUGGCGuGGa--UG- -5'
21420 5' -55 NC_004812.1 + 144731 0.71 0.711662
Target:  5'- cGACUgCCGGacGGACuuCUGCGCCUACc -3'
miRNA:   3'- uUUGAgGGCCa-UCUGu-GGCGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 156022 0.7 0.721764
Target:  5'- gGGACgCCCGGggccGGGgGCCGCGCCgcgggACg -3'
miRNA:   3'- -UUUGaGGGCCa---UCUgUGGCGUGGa----UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.