miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21420 5' -55 NC_004812.1 + 4393 0.67 0.873656
Target:  5'- gAGGCgucgCCCgGGUGGuccCGCCGCacucGCCUGCc -3'
miRNA:   3'- -UUUGa---GGG-CCAUCu--GUGGCG----UGGAUG- -5'
21420 5' -55 NC_004812.1 + 136472 0.7 0.770887
Target:  5'- cGAGCUCCCGGccgGGGC-CCGguCCg-- -3'
miRNA:   3'- -UUUGAGGGCCa--UCUGuGGCguGGaug -5'
21420 5' -55 NC_004812.1 + 85650 0.69 0.798904
Target:  5'- --uCUCCCGGgcaggucgAGGCGCCGCaguacgccgcccGCCUGu -3'
miRNA:   3'- uuuGAGGGCCa-------UCUGUGGCG------------UGGAUg -5'
21420 5' -55 NC_004812.1 + 84632 0.69 0.798904
Target:  5'- cGAC-CCUGGc-GACGCCGCGCCagACg -3'
miRNA:   3'- uUUGaGGGCCauCUGUGGCGUGGa-UG- -5'
21420 5' -55 NC_004812.1 + 105147 0.69 0.81682
Target:  5'- ---aUCCUGGUAGugguggccguaGCGCCcCGCCUGCg -3'
miRNA:   3'- uuugAGGGCCAUC-----------UGUGGcGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 8748 0.68 0.842374
Target:  5'- --uCUCCCGGgcG-CGCCGCACa--- -3'
miRNA:   3'- uuuGAGGGCCauCuGUGGCGUGgaug -5'
21420 5' -55 NC_004812.1 + 1245 0.68 0.858437
Target:  5'- ----gCCCGGgcGGCGCCGCgGCCg-- -3'
miRNA:   3'- uuugaGGGCCauCUGUGGCG-UGGaug -5'
21420 5' -55 NC_004812.1 + 130543 0.68 0.866915
Target:  5'- cGAC-CCCGGgccgggggcgcgcgaGGGCGCCGCGCCc-- -3'
miRNA:   3'- uUUGaGGGCCa--------------UCUGUGGCGUGGaug -5'
21420 5' -55 NC_004812.1 + 142287 0.67 0.873656
Target:  5'- gGAGCUCCUGGacgaGGGCcCCGgGCCgGCg -3'
miRNA:   3'- -UUUGAGGGCCa---UCUGuGGCgUGGaUG- -5'
21420 5' -55 NC_004812.1 + 1627 0.7 0.741719
Target:  5'- gAAACuUCCCGGUAGGCGgaucgaugaCGCGCCg-- -3'
miRNA:   3'- -UUUG-AGGGCCAUCUGUg--------GCGUGGaug -5'
21420 5' -55 NC_004812.1 + 119348 0.7 0.731786
Target:  5'- -cGCgUCCCuGGcGGGCGgCGCGCCUGCc -3'
miRNA:   3'- uuUG-AGGG-CCaUCUGUgGCGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 156022 0.7 0.721764
Target:  5'- gGGACgCCCGGggccGGGgGCCGCGCCgcgggACg -3'
miRNA:   3'- -UUUGaGGGCCa---UCUgUGGCGUGGa----UG- -5'
21420 5' -55 NC_004812.1 + 144782 0.74 0.496819
Target:  5'- -uGCUCCCGG-GGACACCGUccacACCgACg -3'
miRNA:   3'- uuUGAGGGCCaUCUGUGGCG----UGGaUG- -5'
21420 5' -55 NC_004812.1 + 6201 0.72 0.660295
Target:  5'- gGGGCgCCCGGcggcccgcGGACGCCGCcCCUGCc -3'
miRNA:   3'- -UUUGaGGGCCa-------UCUGUGGCGuGGAUG- -5'
21420 5' -55 NC_004812.1 + 75164 0.71 0.680976
Target:  5'- gAGGCUCUCGGccucGCuCCGCGCCUGCc -3'
miRNA:   3'- -UUUGAGGGCCauc-UGuGGCGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 65397 0.71 0.680976
Target:  5'- -cGCUCCgCGaGcUGGACGCCGCGCCc-- -3'
miRNA:   3'- uuUGAGG-GC-C-AUCUGUGGCGUGGaug -5'
21420 5' -55 NC_004812.1 + 41955 0.71 0.691259
Target:  5'- ----aCCCGGUGGcGgGCCGCACCgACg -3'
miRNA:   3'- uuugaGGGCCAUC-UgUGGCGUGGaUG- -5'
21420 5' -55 NC_004812.1 + 31403 0.71 0.691259
Target:  5'- cGAGCaggaCCGGcAGGCGCCGCGCCa-- -3'
miRNA:   3'- -UUUGag--GGCCaUCUGUGGCGUGGaug -5'
21420 5' -55 NC_004812.1 + 82531 0.71 0.711662
Target:  5'- gAGGC-CCCGGgAGGCGCCGC-CCgugGCc -3'
miRNA:   3'- -UUUGaGGGCCaUCUGUGGCGuGGa--UG- -5'
21420 5' -55 NC_004812.1 + 154155 0.7 0.721764
Target:  5'- cGGACUUCCGccgcGGcgaggcgcacucGCACCGCGCCUGCg -3'
miRNA:   3'- -UUUGAGGGCca--UC------------UGUGGCGUGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.