miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21420 5' -55 NC_004812.1 + 83 0.66 0.925265
Target:  5'- cGGGCUCCCGGgcGGgcucccggcccCGCgCGCGCCccgGCc -3'
miRNA:   3'- -UUUGAGGGCCauCU-----------GUG-GCGUGGa--UG- -5'
21420 5' -55 NC_004812.1 + 454 0.66 0.907715
Target:  5'- -cGCgagCCCGGgccGcCGgCGCGCCUGCg -3'
miRNA:   3'- uuUGa--GGGCCau-CuGUgGCGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 1245 0.68 0.858437
Target:  5'- ----gCCCGGgcGGCGCCGCgGCCg-- -3'
miRNA:   3'- uuugaGGGCCauCUGUGGCG-UGGaug -5'
21420 5' -55 NC_004812.1 + 1627 0.7 0.741719
Target:  5'- gAAACuUCCCGGUAGGCGgaucgaugaCGCGCCg-- -3'
miRNA:   3'- -UUUG-AGGGCCAUCUGUg--------GCGUGGaug -5'
21420 5' -55 NC_004812.1 + 4393 0.67 0.873656
Target:  5'- gAGGCgucgCCCgGGUGGuccCGCCGCacucGCCUGCc -3'
miRNA:   3'- -UUUGa---GGG-CCAUCu--GUGGCG----UGGAUG- -5'
21420 5' -55 NC_004812.1 + 5034 0.68 0.866915
Target:  5'- cGAC-CCCGGgccgggggcgcgcgaGGGCGCCGCGCCc-- -3'
miRNA:   3'- uUUGaGGGCCa--------------UCUGUGGCGUGGaug -5'
21420 5' -55 NC_004812.1 + 6201 0.72 0.660295
Target:  5'- gGGGCgCCCGGcggcccgcGGACGCCGCcCCUGCc -3'
miRNA:   3'- -UUUGaGGGCCa-------UCUGUGGCGuGGAUG- -5'
21420 5' -55 NC_004812.1 + 8748 0.68 0.842374
Target:  5'- --uCUCCCGGgcG-CGCCGCACa--- -3'
miRNA:   3'- uuuGAGGGCCauCuGUGGCGUGgaug -5'
21420 5' -55 NC_004812.1 + 11582 0.67 0.901376
Target:  5'- gGGGCaCCgGGggggagGGACGCCGCGCgaGCa -3'
miRNA:   3'- -UUUGaGGgCCa-----UCUGUGGCGUGgaUG- -5'
21420 5' -55 NC_004812.1 + 11742 0.68 0.842374
Target:  5'- -cACUCCuCGG-GGACgucgaACCGCACCcACa -3'
miRNA:   3'- uuUGAGG-GCCaUCUG-----UGGCGUGGaUG- -5'
21420 5' -55 NC_004812.1 + 13304 0.66 0.91381
Target:  5'- -uGCgcagCCUGGUGGuCACCGCgAUCUGg -3'
miRNA:   3'- uuUGa---GGGCCAUCuGUGGCG-UGGAUg -5'
21420 5' -55 NC_004812.1 + 14340 0.66 0.930622
Target:  5'- gGAGCUCCgGGa----GCCGCACgUGCu -3'
miRNA:   3'- -UUUGAGGgCCaucugUGGCGUGgAUG- -5'
21420 5' -55 NC_004812.1 + 18718 0.69 0.789709
Target:  5'- uAGCUCCgCGGcgcugGGGCGCCGCGCg--- -3'
miRNA:   3'- uUUGAGG-GCCa----UCUGUGGCGUGgaug -5'
21420 5' -55 NC_004812.1 + 19266 0.76 0.412868
Target:  5'- cAGCUgCCGGgcGAgCGCCGuCACCUGCg -3'
miRNA:   3'- uUUGAgGGCCauCU-GUGGC-GUGGAUG- -5'
21420 5' -55 NC_004812.1 + 20043 0.66 0.925265
Target:  5'- cGAGCgUCCCGGUAGGCcaucagGCCccgcgucgcgcGCGCCaGCc -3'
miRNA:   3'- -UUUG-AGGGCCAUCUG------UGG-----------CGUGGaUG- -5'
21420 5' -55 NC_004812.1 + 20589 0.66 0.925265
Target:  5'- cGGACcggCCGGUggcgaGGACG-CGCGCCUGCg -3'
miRNA:   3'- -UUUGag-GGCCA-----UCUGUgGCGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 20673 0.66 0.930622
Target:  5'- aGAGCgaggaGGUggcGGACGCCGCcGCCUGCu -3'
miRNA:   3'- -UUUGaggg-CCA---UCUGUGGCG-UGGAUG- -5'
21420 5' -55 NC_004812.1 + 22927 0.65 0.935732
Target:  5'- -cGCcCCCGcGccUGGACGCCcagagucuguggGCACCUACg -3'
miRNA:   3'- uuUGaGGGC-C--AUCUGUGG------------CGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 24493 0.66 0.907715
Target:  5'- -cGCUCCUGGacgggGGGCccCCGCGCCg-- -3'
miRNA:   3'- uuUGAGGGCCa----UCUGu-GGCGUGGaug -5'
21420 5' -55 NC_004812.1 + 25406 0.67 0.901376
Target:  5'- -cGCUCgCCGG-AGAcCGCCGCGCg-GCg -3'
miRNA:   3'- uuUGAG-GGCCaUCU-GUGGCGUGgaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.