miRNA display CGI


Results 1 - 20 of 232 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21427 5' -60 NC_004812.1 + 42573 0.66 0.760079
Target:  5'- -cCGUCGGGaGCGAcgcgcgcGCC-GACGGCGa -3'
miRNA:   3'- uaGCAGCUCaCGCU-------CGGcCUGCCGCc -5'
21427 5' -60 NC_004812.1 + 152200 0.66 0.796687
Target:  5'- cUCGggcaggCGAGUGCG-GCgGGACcacccgGGCGa -3'
miRNA:   3'- uAGCa-----GCUCACGCuCGgCCUG------CCGCc -5'
21427 5' -60 NC_004812.1 + 99234 0.66 0.779085
Target:  5'- cGUCGgCGGGgGCGggggccguccgGGCCGGAggcacgcacCGGCGGc -3'
miRNA:   3'- -UAGCaGCUCaCGC-----------UCGGCCU---------GCCGCC- -5'
21427 5' -60 NC_004812.1 + 114087 0.66 0.770097
Target:  5'- -gCGUgGuGUGcCGGGgCGGACGGaUGGg -3'
miRNA:   3'- uaGCAgCuCAC-GCUCgGCCUGCC-GCC- -5'
21427 5' -60 NC_004812.1 + 141463 0.66 0.751788
Target:  5'- gGUCGUgcggggagccccCGAG-GCGAcgcgGCCGGACGcGCGc -3'
miRNA:   3'- -UAGCA------------GCUCaCGCU----CGGCCUGC-CGCc -5'
21427 5' -60 NC_004812.1 + 148858 0.66 0.782646
Target:  5'- cUCGUCGGGgugggGUucgcgagaggacgacGGGCgCGGAuccCGGCGGg -3'
miRNA:   3'- uAGCAGCUCa----CG---------------CUCG-GCCU---GCCGCC- -5'
21427 5' -60 NC_004812.1 + 60332 0.66 0.776401
Target:  5'- -cCGUCGAGcaucgugaaggugaUGUcGGCCGGcAgGGCGGc -3'
miRNA:   3'- uaGCAGCUC--------------ACGcUCGGCC-UgCCGCC- -5'
21427 5' -60 NC_004812.1 + 71232 0.66 0.770097
Target:  5'- -cCG-CGAGgGCGcGGCgGgGACGGCGGc -3'
miRNA:   3'- uaGCaGCUCaCGC-UCGgC-CUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 5852 0.66 0.759162
Target:  5'- cUCGggaggCGGGgggaacaugggcGCGGGCCGGGgGGCGcGg -3'
miRNA:   3'- uAGCa----GCUCa-----------CGCUCGGCCUgCCGC-C- -5'
21427 5' -60 NC_004812.1 + 121720 0.66 0.760995
Target:  5'- -gCGgCGAgagcagGUGCccGGGCCGGcgcGCGGCGGg -3'
miRNA:   3'- uaGCaGCU------CACG--CUCGGCC---UGCCGCC- -5'
21427 5' -60 NC_004812.1 + 7647 0.66 0.775504
Target:  5'- gGUCGgggcgcgaagcugCGGGcccGCGGGCCgggagcgggGGugGGCGGg -3'
miRNA:   3'- -UAGCa------------GCUCa--CGCUCGG---------CCugCCGCC- -5'
21427 5' -60 NC_004812.1 + 92913 0.66 0.770097
Target:  5'- --gGUCGAGgauccCGAGgCGGA-GGCGGg -3'
miRNA:   3'- uagCAGCUCac---GCUCgGCCUgCCGCC- -5'
21427 5' -60 NC_004812.1 + 7916 0.66 0.751788
Target:  5'- -gUGUCGGGggcUGCGGcgcgcGCCGGcGCGGcCGGg -3'
miRNA:   3'- uaGCAGCUC---ACGCU-----CGGCC-UGCC-GCC- -5'
21427 5' -60 NC_004812.1 + 131063 0.66 0.770097
Target:  5'- cGUCGUCGGGcuccuCGGGguCCGGcguucGCGGCGGc -3'
miRNA:   3'- -UAGCAGCUCac---GCUC--GGCC-----UGCCGCC- -5'
21427 5' -60 NC_004812.1 + 30584 0.66 0.778191
Target:  5'- cUCGcagaaGAGcGCccgccggGGGUCGGGCGGCGGg -3'
miRNA:   3'- uAGCag---CUCaCG-------CUCGGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 129644 0.66 0.779085
Target:  5'- cUCGUCgGAGaggGCGGccGCCaGGCGGCGc -3'
miRNA:   3'- uAGCAG-CUCa--CGCU--CGGcCUGCCGCc -5'
21427 5' -60 NC_004812.1 + 63031 0.66 0.764649
Target:  5'- uUCGucacauUCGGGUgguaccgccuggggcGCGGGCgGGACGGCa- -3'
miRNA:   3'- uAGC------AGCUCA---------------CGCUCGgCCUGCCGcc -5'
21427 5' -60 NC_004812.1 + 63208 0.66 0.779085
Target:  5'- ---aUCGAGUGCaAGgCGGGCGG-GGa -3'
miRNA:   3'- uagcAGCUCACGcUCgGCCUGCCgCC- -5'
21427 5' -60 NC_004812.1 + 121122 0.66 0.751788
Target:  5'- --gGUCGGGgGCGGGUCGG-CGGgccCGGg -3'
miRNA:   3'- uagCAGCUCaCGCUCGGCCuGCC---GCC- -5'
21427 5' -60 NC_004812.1 + 96090 0.66 0.751788
Target:  5'- gGUCcUCGAGgGCGAGCCGuuCGG-GGc -3'
miRNA:   3'- -UAGcAGCUCaCGCUCGGCcuGCCgCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.