miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21427 5' -60 NC_004812.1 + 87 0.68 0.645868
Target:  5'- cUCG-CGAGgGaCGGGCCGGggcGCGcGCGGg -3'
miRNA:   3'- uAGCaGCUCaC-GCUCGGCC---UGC-CGCC- -5'
21427 5' -60 NC_004812.1 + 2012 0.7 0.536619
Target:  5'- gGUCGcUCGGGgcgccgacgccgGCGGGCCucggucGGCGGCGGg -3'
miRNA:   3'- -UAGC-AGCUCa-----------CGCUCGGc-----CUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 2445 0.67 0.742483
Target:  5'- -gCGgugCGAGUGCGccucGCC--GCGGCGGa -3'
miRNA:   3'- uaGCa--GCUCACGCu---CGGccUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 2499 0.69 0.586903
Target:  5'- cUCG-CGGGcggGCGAGUCGG-CGGCGcGg -3'
miRNA:   3'- uAGCaGCUCa--CGCUCGGCCuGCCGC-C- -5'
21427 5' -60 NC_004812.1 + 2527 0.75 0.286307
Target:  5'- -cCGUCGAGcGCGGGCagcaCGGcGCGGCGGu -3'
miRNA:   3'- uaGCAGCUCaCGCUCG----GCC-UGCCGCC- -5'
21427 5' -60 NC_004812.1 + 2872 0.71 0.473344
Target:  5'- -aCGaCGAGgcgGCG-GCCGGcgGCGGCGGc -3'
miRNA:   3'- uaGCaGCUCa--CGCuCGGCC--UGCCGCC- -5'
21427 5' -60 NC_004812.1 + 3084 0.72 0.429299
Target:  5'- -gCGUCGGuccagGCGGGCgGGGCGGgGGa -3'
miRNA:   3'- uaGCAGCUca---CGCUCGgCCUGCCgCC- -5'
21427 5' -60 NC_004812.1 + 3500 0.68 0.665516
Target:  5'- -cCG-CGGGcGCGGGCCcgGGGcCGGCGGc -3'
miRNA:   3'- uaGCaGCUCaCGCUCGG--CCU-GCCGCC- -5'
21427 5' -60 NC_004812.1 + 4135 0.66 0.779085
Target:  5'- cUCGUCgGAGaggGCGGccGCCaGGCGGCGc -3'
miRNA:   3'- uAGCAG-CUCa--CGCU--CGGcCUGCCGCc -5'
21427 5' -60 NC_004812.1 + 4223 0.69 0.616336
Target:  5'- -gCGUCGGGcucGgGGGCgGcGGCGGCGGc -3'
miRNA:   3'- uaGCAGCUCa--CgCUCGgC-CUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 5120 0.67 0.733088
Target:  5'- cGUCGUCGucaucgGGGCCgcccggGGACGGCGGc -3'
miRNA:   3'- -UAGCAGCucacg-CUCGG------CCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 5121 0.67 0.714065
Target:  5'- --gGUcCGGGggGCGGGCgCGGA-GGCGGg -3'
miRNA:   3'- uagCA-GCUCa-CGCUCG-GCCUgCCGCC- -5'
21427 5' -60 NC_004812.1 + 5555 0.66 0.770097
Target:  5'- cGUCGUCGGGcuccuCGGGguCCGGcguucGCGGCGGc -3'
miRNA:   3'- -UAGCAGCUCac---GCUC--GGCC-----UGCCGCC- -5'
21427 5' -60 NC_004812.1 + 5675 0.68 0.675308
Target:  5'- -gCGUCgGAGUccugcGCGAacGCCGcGCGGCGGu -3'
miRNA:   3'- uaGCAG-CUCA-----CGCU--CGGCcUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 5824 0.69 0.586903
Target:  5'- -gCGgCGGGcucUGCGGGCCGG-CGGCGc -3'
miRNA:   3'- uaGCaGCUC---ACGCUCGGCCuGCCGCc -5'
21427 5' -60 NC_004812.1 + 5852 0.66 0.759162
Target:  5'- cUCGggaggCGGGgggaacaugggcGCGGGCCGGGgGGCGcGg -3'
miRNA:   3'- uAGCa----GCUCa-----------CGCUCGGCCUgCCGC-C- -5'
21427 5' -60 NC_004812.1 + 6158 0.67 0.742483
Target:  5'- -----gGGGUcGgGGGCCuGGGCGGCGGg -3'
miRNA:   3'- uagcagCUCA-CgCUCGG-CCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 6854 0.7 0.529006
Target:  5'- gGUCGgCGAG-GCGGcccGCCGGG-GGCGGa -3'
miRNA:   3'- -UAGCaGCUCaCGCU---CGGCCUgCCGCC- -5'
21427 5' -60 NC_004812.1 + 7551 0.7 0.557741
Target:  5'- ---cUCGGGgGCGGGCgCGGGgGGCGGu -3'
miRNA:   3'- uagcAGCUCaCGCUCG-GCCUgCCGCC- -5'
21427 5' -60 NC_004812.1 + 7647 0.66 0.775504
Target:  5'- gGUCGgggcgcgaagcugCGGGcccGCGGGCCgggagcgggGGugGGCGGg -3'
miRNA:   3'- -UAGCa------------GCUCa--CGCUCGG---------CCugCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.