miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21427 5' -60 NC_004812.1 + 101710 1.07 0.002029
Target:  5'- cAUCGUCGAGUGCGAGCCGGACGGCGGc -3'
miRNA:   3'- -UAGCAGCUCACGCUCGGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 94528 0.81 0.130165
Target:  5'- -gCGUCaGGcGCGGGUCGGACGGCGGg -3'
miRNA:   3'- uaGCAGcUCaCGCUCGGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 90418 0.81 0.130165
Target:  5'- cUUGUCGucuGUGCGGGCgCgGGACGGCGGg -3'
miRNA:   3'- uAGCAGCu--CACGCUCG-G-CCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 48146 0.79 0.158652
Target:  5'- cGUCcUCGAGgcGCGGcGCCGGGCGGCGGc -3'
miRNA:   3'- -UAGcAGCUCa-CGCU-CGGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 135220 0.79 0.158652
Target:  5'- cUCGUCGucuGUGUugGGGCCGGGCGGgCGGg -3'
miRNA:   3'- uAGCAGCu--CACG--CUCGGCCUGCC-GCC- -5'
21427 5' -60 NC_004812.1 + 154500 0.78 0.19265
Target:  5'- cGUCGUCG-G-GCGGG-CGGGCGGCGGa -3'
miRNA:   3'- -UAGCAGCuCaCGCUCgGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 123599 0.78 0.19265
Target:  5'- cGUCGUCG-G-GCGGG-CGGGCGGCGGa -3'
miRNA:   3'- -UAGCAGCuCaCGCUCgGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 74345 0.78 0.197323
Target:  5'- cGUCGaCGAGcaggggcGCGGGCgCGGGCGGCGGg -3'
miRNA:   3'- -UAGCaGCUCa------CGCUCG-GCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 156317 0.78 0.202095
Target:  5'- cUC-UCGGGcGCG-GCCGGACGGCGGc -3'
miRNA:   3'- uAGcAGCUCaCGCuCGGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 125416 0.78 0.202095
Target:  5'- cUC-UCGGGcGCG-GCCGGACGGCGGc -3'
miRNA:   3'- uAGcAGCUCaCGCuCGGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 138514 0.77 0.222194
Target:  5'- cGUCGUCcgcguGUGCGgcGGcCCGGACGGCGGc -3'
miRNA:   3'- -UAGCAGcu---CACGC--UC-GGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 81785 0.76 0.243969
Target:  5'- cAUCGUCGGGaGgGGGCCGG-CGGCGu -3'
miRNA:   3'- -UAGCAGCUCaCgCUCGGCCuGCCGCc -5'
21427 5' -60 NC_004812.1 + 88197 0.76 0.255507
Target:  5'- cUCGgccgCGGG-GCGAGCCgcggccccGGACGGCGGc -3'
miRNA:   3'- uAGCa---GCUCaCGCUCGG--------CCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 72136 0.76 0.255507
Target:  5'- gGUCGggaGGGUGCgGGGCCGGGggaGGCGGg -3'
miRNA:   3'- -UAGCag-CUCACG-CUCGGCCUg--CCGCC- -5'
21427 5' -60 NC_004812.1 + 44118 0.76 0.271789
Target:  5'- gGUCGUCGGGUccgggggagcgcgcGCGuucggucGCCGGACGGcCGGa -3'
miRNA:   3'- -UAGCAGCUCA--------------CGCu------CGGCCUGCC-GCC- -5'
21427 5' -60 NC_004812.1 + 128035 0.75 0.286307
Target:  5'- -cCGUCGAGcGCGGGCagcaCGGcGCGGCGGu -3'
miRNA:   3'- uaGCAGCUCaCGCUCG----GCC-UGCCGCC- -5'
21427 5' -60 NC_004812.1 + 2527 0.75 0.286307
Target:  5'- -cCGUCGAGcGCGGGCagcaCGGcGCGGCGGu -3'
miRNA:   3'- uaGCAGCUCaCGCUCG----GCC-UGCCGCC- -5'
21427 5' -60 NC_004812.1 + 115473 0.75 0.312998
Target:  5'- cUCGccgcgCGcGUGCGGccgcGCCGGGCGGCGGc -3'
miRNA:   3'- uAGCa----GCuCACGCU----CGGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 144575 0.74 0.327036
Target:  5'- cGUCGUCGGcGUGCGugcuGCCGGACGcCGa -3'
miRNA:   3'- -UAGCAGCU-CACGCu---CGGCCUGCcGCc -5'
21427 5' -60 NC_004812.1 + 146778 0.74 0.333503
Target:  5'- cGUCGUCGAG-GCccaacgaGGGCCGcGAgGGCGGc -3'
miRNA:   3'- -UAGCAGCUCaCG-------CUCGGC-CUgCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.