miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21427 5' -60 NC_004812.1 + 79168 0.71 0.49067
Target:  5'- -gUGUCGGccgGCGgacaggucuucgaGGCUGGACGGCGGg -3'
miRNA:   3'- uaGCAGCUca-CGC-------------UCGGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 128593 0.72 0.429299
Target:  5'- -gCGUCGGuccagGCGGGCgGGGCGGgGGa -3'
miRNA:   3'- uaGCAGCUca---CGCUCGgCCUGCCgCC- -5'
21427 5' -60 NC_004812.1 + 83355 0.72 0.437917
Target:  5'- -cUGUCGGGUccGCGccGGCCccaGGGCGGCGGc -3'
miRNA:   3'- uaGCAGCUCA--CGC--UCGG---CCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 137972 0.72 0.437917
Target:  5'- cUCGUCGGG-GCgGGGUCGGGgGGgGGg -3'
miRNA:   3'- uAGCAGCUCaCG-CUCGGCCUgCCgCC- -5'
21427 5' -60 NC_004812.1 + 113025 0.72 0.446633
Target:  5'- -aCG-CGAGggcggGCGcGCCGGACGGaCGGc -3'
miRNA:   3'- uaGCaGCUCa----CGCuCGGCCUGCC-GCC- -5'
21427 5' -60 NC_004812.1 + 71881 0.72 0.446633
Target:  5'- gGUUGgugaGAGagccgacgGCGGGCCGGGCGGCGcGg -3'
miRNA:   3'- -UAGCag--CUCa-------CGCUCGGCCUGCCGC-C- -5'
21427 5' -60 NC_004812.1 + 122705 0.71 0.461668
Target:  5'- cAUCGUCGcuguccucgcugucGGUGaCGGGCCGGcccauGCGGgCGGg -3'
miRNA:   3'- -UAGCAGC--------------UCAC-GCUCGGCC-----UGCC-GCC- -5'
21427 5' -60 NC_004812.1 + 95866 0.71 0.464349
Target:  5'- -gCG-CGGGUGCGgugGGCCGaGGgGGCGGg -3'
miRNA:   3'- uaGCaGCUCACGC---UCGGC-CUgCCGCC- -5'
21427 5' -60 NC_004812.1 + 128380 0.71 0.473344
Target:  5'- -aCGaCGAGgcgGCG-GCCGGcgGCGGCGGc -3'
miRNA:   3'- uaGCaGCUCa--CGCuCGGCC--UGCCGCC- -5'
21427 5' -60 NC_004812.1 + 72318 0.72 0.420782
Target:  5'- gAUCGaUCGGGcGCG-GCCGGGCGggccGCGGg -3'
miRNA:   3'- -UAGC-AGCUCaCGCuCGGCCUGC----CGCC- -5'
21427 5' -60 NC_004812.1 + 72281 0.74 0.334227
Target:  5'- cUCGgauggcCGAgGUGCGGGCCGGGgCGGgGGg -3'
miRNA:   3'- uAGCa-----GCU-CACGCUCGGCCU-GCCgCC- -5'
21427 5' -60 NC_004812.1 + 115473 0.75 0.312998
Target:  5'- cUCGccgcgCGcGUGCGGccgcGCCGGGCGGCGGc -3'
miRNA:   3'- uAGCa----GCuCACGCU----CGGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 135220 0.79 0.158652
Target:  5'- cUCGUCGucuGUGUugGGGCCGGGCGGgCGGg -3'
miRNA:   3'- uAGCAGCu--CACG--CUCGGCCUGCC-GCC- -5'
21427 5' -60 NC_004812.1 + 48146 0.79 0.158652
Target:  5'- cGUCcUCGAGgcGCGGcGCCGGGCGGCGGc -3'
miRNA:   3'- -UAGcAGCUCa-CGCU-CGGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 123599 0.78 0.19265
Target:  5'- cGUCGUCG-G-GCGGG-CGGGCGGCGGa -3'
miRNA:   3'- -UAGCAGCuCaCGCUCgGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 74345 0.78 0.197323
Target:  5'- cGUCGaCGAGcaggggcGCGGGCgCGGGCGGCGGg -3'
miRNA:   3'- -UAGCaGCUCa------CGCUCG-GCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 125416 0.78 0.202095
Target:  5'- cUC-UCGGGcGCG-GCCGGACGGCGGc -3'
miRNA:   3'- uAGcAGCUCaCGCuCGGCCUGCCGCC- -5'
21427 5' -60 NC_004812.1 + 81785 0.76 0.243969
Target:  5'- cAUCGUCGGGaGgGGGCCGG-CGGCGu -3'
miRNA:   3'- -UAGCAGCUCaCgCUCGGCCuGCCGCc -5'
21427 5' -60 NC_004812.1 + 72136 0.76 0.255507
Target:  5'- gGUCGggaGGGUGCgGGGCCGGGggaGGCGGg -3'
miRNA:   3'- -UAGCag-CUCACG-CUCGGCCUg--CCGCC- -5'
21427 5' -60 NC_004812.1 + 128035 0.75 0.286307
Target:  5'- -cCGUCGAGcGCGGGCagcaCGGcGCGGCGGu -3'
miRNA:   3'- uaGCAGCUCaCGCUCG----GCC-UGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.