miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21431 3' -57.6 NC_004812.1 + 73994 0.66 0.891924
Target:  5'- cCGUGGUCaucaACGCGCUgaUCGacgCGGGc -3'
miRNA:   3'- uGUACCAGc---UGCGCGAggAGCa--GCCC- -5'
21431 3' -57.6 NC_004812.1 + 52489 0.66 0.891924
Target:  5'- gGCAUGGagucgcuguUCGACGaGCUCUUUG-CGGa -3'
miRNA:   3'- -UGUACC---------AGCUGCgCGAGGAGCaGCCc -5'
21431 3' -57.6 NC_004812.1 + 145785 0.66 0.891924
Target:  5'- gGCGUGGcCGAagaccUGCGUgUCCUCG-CGGa -3'
miRNA:   3'- -UGUACCaGCU-----GCGCG-AGGAGCaGCCc -5'
21431 3' -57.6 NC_004812.1 + 50018 0.66 0.885314
Target:  5'- -gGUGG-CGGCgGCGCUCCccccCG-CGGGc -3'
miRNA:   3'- ugUACCaGCUG-CGCGAGGa---GCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 29909 0.66 0.885314
Target:  5'- -gGUGGgccgCGAUGCGCggCC-CG-CGGGu -3'
miRNA:   3'- ugUACCa---GCUGCGCGa-GGaGCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 47884 0.66 0.881246
Target:  5'- aGCA-GGUaguaGCGCGCcacggcacgaggcucUUCUCGUCGGGc -3'
miRNA:   3'- -UGUaCCAgc--UGCGCG---------------AGGAGCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 148833 0.66 0.878493
Target:  5'- ---aGGgCGAggggUGCGCggggcucaCCUCGUCGGGg -3'
miRNA:   3'- uguaCCaGCU----GCGCGa-------GGAGCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 114376 0.66 0.878493
Target:  5'- aACAcg--CGACGCGCgcggUCCUCcUCGGGc -3'
miRNA:   3'- -UGUaccaGCUGCGCG----AGGAGcAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 100203 0.66 0.878493
Target:  5'- gACGUGGgccCGgaGCGCGgccgcCUCCUCGUCGc- -3'
miRNA:   3'- -UGUACCa--GC--UGCGC-----GAGGAGCAGCcc -5'
21431 3' -57.6 NC_004812.1 + 23325 0.66 0.878493
Target:  5'- ---aGGgCGAggggUGCGCggggcucaCCUCGUCGGGg -3'
miRNA:   3'- uguaCCaGCU----GCGCGa-------GGAGCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 134237 0.66 0.871464
Target:  5'- gACGcUGG-CGGCGCGCUUUgccgCGUCaGGc -3'
miRNA:   3'- -UGU-ACCaGCUGCGCGAGGa---GCAGcCC- -5'
21431 3' -57.6 NC_004812.1 + 23441 0.66 0.871464
Target:  5'- -gGUGGUCGGgGCGCgagagCgggUCGUCGGc -3'
miRNA:   3'- ugUACCAGCUgCGCGa----Gg--AGCAGCCc -5'
21431 3' -57.6 NC_004812.1 + 148949 0.66 0.871464
Target:  5'- -gGUGGUCGGgGCGCgagagCgggUCGUCGGc -3'
miRNA:   3'- ugUACCAGCUgCGCGa----Gg--AGCAGCCc -5'
21431 3' -57.6 NC_004812.1 + 56225 0.66 0.871464
Target:  5'- gGCGUcGGccucgCGGCGCGCcgaCUCGUCcgcGGGg -3'
miRNA:   3'- -UGUA-CCa----GCUGCGCGag-GAGCAG---CCC- -5'
21431 3' -57.6 NC_004812.1 + 22527 0.66 0.871464
Target:  5'- cGCGacGUCGGCGCcC-CCgCGUCGGGa -3'
miRNA:   3'- -UGUacCAGCUGCGcGaGGaGCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 24800 0.66 0.864232
Target:  5'- ---aGGgCGACGgGCacggCCUgGUCGGGc -3'
miRNA:   3'- uguaCCaGCUGCgCGa---GGAgCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 12150 0.66 0.864232
Target:  5'- cGCGcUGGggCGGCGCGC----CGUCGGGg -3'
miRNA:   3'- -UGU-ACCa-GCUGCGCGaggaGCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 64160 0.66 0.864232
Target:  5'- ---cGGcgCGGCGgGCUCCgCG-CGGGa -3'
miRNA:   3'- uguaCCa-GCUGCgCGAGGaGCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 53576 0.66 0.862762
Target:  5'- ---aGGUCGACGCGCgacagggcguaCUCGgugCGGu -3'
miRNA:   3'- uguaCCAGCUGCGCGag---------GAGCa--GCCc -5'
21431 3' -57.6 NC_004812.1 + 19695 0.66 0.861284
Target:  5'- gGCccGGUCGGCcucgggcccaacgGCGUacccgucgccccccUCCUCGUcCGGGa -3'
miRNA:   3'- -UGuaCCAGCUG-------------CGCG--------------AGGAGCA-GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.