miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21431 5' -56.6 NC_004812.1 + 77450 0.66 0.896119
Target:  5'- gCAgCUCgGCCGGGGGGCUcguggcgagcGGAggCGGGGc -3'
miRNA:   3'- -GUgGAG-CGGUCUCCUGG----------UCUa-GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 9871 0.66 0.882775
Target:  5'- cCGCC-CGCCuu-GGACUGGA-CGGGGu -3'
miRNA:   3'- -GUGGaGCGGucuCCUGGUCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 9658 0.66 0.882775
Target:  5'- cCACCcCGcCCGGAcGGACCcacGAgcccgCGAGGa -3'
miRNA:   3'- -GUGGaGC-GGUCU-CCUGGu--CUa----GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 122087 0.66 0.896119
Target:  5'- gGCCUgagCGCCGGGgcGGGCCuGGGUC-AGGg -3'
miRNA:   3'- gUGGA---GCGGUCU--CCUGG-UCUAGcUCC- -5'
21431 5' -56.6 NC_004812.1 + 34531 0.66 0.907968
Target:  5'- uUACCUgCGCCgcGGAGGcagcuuuauuaACCgcugagcGGGUCGGGGg -3'
miRNA:   3'- -GUGGA-GCGG--UCUCC-----------UGG-------UCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 3245 0.66 0.901833
Target:  5'- gCGCC-CGCCAGGGGcgcccgcgcccccGCCGcc-CGAGGa -3'
miRNA:   3'- -GUGGaGCGGUCUCC-------------UGGUcuaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 87749 0.66 0.902457
Target:  5'- aCGCC-CGCCGGGGGaacGCCAGcAUCa--- -3'
miRNA:   3'- -GUGGaGCGGUCUCC---UGGUC-UAGcucc -5'
21431 5' -56.6 NC_004812.1 + 57034 0.66 0.896119
Target:  5'- gACCUgGCCgaAGAGGGCCAGGagcuUCugccGGGc -3'
miRNA:   3'- gUGGAgCGG--UCUCCUGGUCU----AGc---UCC- -5'
21431 5' -56.6 NC_004812.1 + 30785 0.66 0.908569
Target:  5'- gGCCcCGCCuGcGGGGCCgcGGGcCGAGGg -3'
miRNA:   3'- gUGGaGCGGuC-UCCUGG--UCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 79687 0.66 0.889557
Target:  5'- cCACCUCGCCucGGGGugCuccuGGGUguaguacgUGAGGu -3'
miRNA:   3'- -GUGGAGCGGu-CUCCugG----UCUA--------GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 73166 0.66 0.914452
Target:  5'- aCGCgCUgGCCcGAGGGCCGGuacagggCGuGGg -3'
miRNA:   3'- -GUG-GAgCGGuCUCCUGGUCua-----GCuCC- -5'
21431 5' -56.6 NC_004812.1 + 66762 0.66 0.914452
Target:  5'- gGCCUCGCgCAcgaauguggcGAGcGCCguGGGUCGGGGc -3'
miRNA:   3'- gUGGAGCG-GU----------CUCcUGG--UCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 42220 0.66 0.902457
Target:  5'- cUACCUgaCGCCcgaGGAGGACCGcgcgcgucgcguGuUCGGGGa -3'
miRNA:   3'- -GUGGA--GCGG---UCUCCUGGU------------CuAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 122774 0.66 0.882775
Target:  5'- gCGCC-CGCCgAGGGuGACCgAGGaCGGGGc -3'
miRNA:   3'- -GUGGaGCGG-UCUC-CUGG-UCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 6368 0.66 0.902457
Target:  5'- cCGCC-CGCCAG-GGACgCGGGcagcguucCGGGGg -3'
miRNA:   3'- -GUGGaGCGGUCuCCUG-GUCUa-------GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 155381 0.66 0.908569
Target:  5'- aGCCgucCGCCAGgaaccccgGGGGCCGGGcCGGGc -3'
miRNA:   3'- gUGGa--GCGGUC--------UCCUGGUCUaGCUCc -5'
21431 5' -56.6 NC_004812.1 + 619 0.66 0.896119
Target:  5'- cCGCCgCGCgAGGGGaggacaGCCGGgAUCGAGu -3'
miRNA:   3'- -GUGGaGCGgUCUCC------UGGUC-UAGCUCc -5'
21431 5' -56.6 NC_004812.1 + 130165 0.66 0.914452
Target:  5'- -cCCUCGUCcucggggacGAGGACgAGAaCGGGGa -3'
miRNA:   3'- guGGAGCGGu--------CUCCUGgUCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 16219 0.66 0.882775
Target:  5'- gGCCgcgCGCCGGAGGcggagccggccgGCCAGGaCGAc- -3'
miRNA:   3'- gUGGa--GCGGUCUCC------------UGGUCUaGCUcc -5'
21431 5' -56.6 NC_004812.1 + 6799 0.66 0.902457
Target:  5'- uGCCUcggggggcgCGCCGGgcgucuGGGGCUGGGUgGGGGg -3'
miRNA:   3'- gUGGA---------GCGGUC------UCCUGGUCUAgCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.