miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21431 5' -56.6 NC_004812.1 + 82 0.67 0.875777
Target:  5'- gCGCaCUCGCgAGGgacGGGCCGGGgcgcgcgCGGGGc -3'
miRNA:   3'- -GUG-GAGCGgUCU---CCUGGUCUa------GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 619 0.66 0.896119
Target:  5'- cCGCCgCGCgAGGGGaggacaGCCGGgAUCGAGu -3'
miRNA:   3'- -GUGGaGCGgUCUCC------UGGUC-UAGCUCc -5'
21431 5' -56.6 NC_004812.1 + 1964 0.71 0.680469
Target:  5'- gCGCCgggCGCCGGGGGGagGGGggGAGGg -3'
miRNA:   3'- -GUGGa--GCGGUCUCCUggUCUagCUCC- -5'
21431 5' -56.6 NC_004812.1 + 2023 0.67 0.853534
Target:  5'- gCGCCgaCGCCGGcGGGCCucGGUCGGcGGc -3'
miRNA:   3'- -GUGGa-GCGGUCuCCUGGu-CUAGCU-CC- -5'
21431 5' -56.6 NC_004812.1 + 3070 0.72 0.599951
Target:  5'- aGCCUCGCCGGuGGGCggcgggacgaCGGcgUGGGGg -3'
miRNA:   3'- gUGGAGCGGUCuCCUG----------GUCuaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 3245 0.66 0.901833
Target:  5'- gCGCC-CGCCAGGGGcgcccgcgcccccGCCGcc-CGAGGa -3'
miRNA:   3'- -GUGGaGCGGUCUCC-------------UGGUcuaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 5459 0.68 0.812663
Target:  5'- cCACCauggagGCCAGcAGGGCCAGcuggcgCGGGGa -3'
miRNA:   3'- -GUGGag----CGGUC-UCCUGGUCua----GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 5611 0.69 0.77706
Target:  5'- -uCC-C-CCAGGGGGCCGGAggcggcUCGGGGg -3'
miRNA:   3'- guGGaGcGGUCUCCUGGUCU------AGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 5639 0.67 0.853534
Target:  5'- gGCCggGCCcGGGGucGCCGGGcgCGAGGg -3'
miRNA:   3'- gUGGagCGGuCUCC--UGGUCUa-GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 5930 0.67 0.845723
Target:  5'- aCGCCgccccggagCGCgGGGGcGACCGGcggcuccgccccGUCGAGGa -3'
miRNA:   3'- -GUGGa--------GCGgUCUC-CUGGUC------------UAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 6368 0.66 0.902457
Target:  5'- cCGCC-CGCCAG-GGACgCGGGcagcguucCGGGGg -3'
miRNA:   3'- -GUGGaGCGGUCuCCUG-GUCUa-------GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 6799 0.66 0.902457
Target:  5'- uGCCUcggggggcgCGCCGGgcgucuGGGGCUGGGUgGGGGg -3'
miRNA:   3'- gUGGA---------GCGGUC------UCCUGGUCUAgCUCC- -5'
21431 5' -56.6 NC_004812.1 + 6920 0.67 0.868567
Target:  5'- gCGCUgCGCCcgcGGGGCCGGggUGGGGg -3'
miRNA:   3'- -GUGGaGCGGuc-UCCUGGUCuaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 7224 0.67 0.845723
Target:  5'- uCGCCUCGCCuGGGGGUuuGGggGAGGa -3'
miRNA:   3'- -GUGGAGCGGuCUCCUGguCUagCUCC- -5'
21431 5' -56.6 NC_004812.1 + 8468 0.67 0.875777
Target:  5'- gGCCcggguaCGCCAGAGGuggAGAUCGAGcGg -3'
miRNA:   3'- gUGGa-----GCGGUCUCCuggUCUAGCUC-C- -5'
21431 5' -56.6 NC_004812.1 + 9658 0.66 0.882775
Target:  5'- cCACCcCGcCCGGAcGGACCcacGAgcccgCGAGGa -3'
miRNA:   3'- -GUGGaGC-GGUCU-CCUGGu--CUa----GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 9871 0.66 0.882775
Target:  5'- cCGCC-CGCCuu-GGACUGGA-CGGGGu -3'
miRNA:   3'- -GUGGaGCGGucuCCUGGUCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 11050 0.78 0.282624
Target:  5'- aGCCUCGCUuGGGGGCCGGGUccgugcCGGGGa -3'
miRNA:   3'- gUGGAGCGGuCUCCUGGUCUA------GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 13006 0.73 0.540299
Target:  5'- uCGCCgcCGCCGGAGGcgGCCuGAUCGccGGGg -3'
miRNA:   3'- -GUGGa-GCGGUCUCC--UGGuCUAGC--UCC- -5'
21431 5' -56.6 NC_004812.1 + 13116 0.66 0.914452
Target:  5'- cCGCCUCGCCGc--GuCCAGGcCGGGGc -3'
miRNA:   3'- -GUGGAGCGGUcucCuGGUCUaGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.