miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21431 5' -56.6 NC_004812.1 + 100693 1.09 0.002809
Target:  5'- cCACCUCGCCAGAGGACCAGAUCGAGGc -3'
miRNA:   3'- -GUGGAGCGGUCUCCUGGUCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 155137 0.81 0.192804
Target:  5'- cCGCggCGgCGGGGGGCCGGGUCGAGGg -3'
miRNA:   3'- -GUGgaGCgGUCUCCUGGUCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 124236 0.81 0.192804
Target:  5'- cCGCggCGgCGGGGGGCCGGGUCGAGGg -3'
miRNA:   3'- -GUGgaGCgGUCUCCUGGUCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 100746 0.81 0.202492
Target:  5'- gACCgCGCugCAGAGGACCAGAcCGAGGg -3'
miRNA:   3'- gUGGaGCG--GUCUCCUGGUCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 11050 0.78 0.282624
Target:  5'- aGCCUCGCUuGGGGGCCGGGUccgugcCGGGGa -3'
miRNA:   3'- gUGGAGCGGuCUCCUGGUCUA------GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 154391 0.77 0.346315
Target:  5'- cCACCUCGgCGGcGGGCCGGGcCGGGGc -3'
miRNA:   3'- -GUGGAGCgGUCuCCUGGUCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 123490 0.77 0.346315
Target:  5'- cCACCUCGgCGGcGGGCCGGGcCGGGGc -3'
miRNA:   3'- -GUGGAGCgGUCuCCUGGUCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 146563 0.77 0.361796
Target:  5'- gUACCUCGUCGGGGGugCAGaAUCGcguccAGGa -3'
miRNA:   3'- -GUGGAGCGGUCUCCugGUC-UAGC-----UCC- -5'
21431 5' -56.6 NC_004812.1 + 73663 0.76 0.369714
Target:  5'- gUACUcgUGCUGGAGGACgAGGUCGAGGc -3'
miRNA:   3'- -GUGGa-GCGGUCUCCUGgUCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 92219 0.75 0.411049
Target:  5'- aGCCUCGCCucGGGGCCGGGa-GAGGg -3'
miRNA:   3'- gUGGAGCGGucUCCUGGUCUagCUCC- -5'
21431 5' -56.6 NC_004812.1 + 151776 0.75 0.455132
Target:  5'- gGCCcCG-CAGGGGGCUGGGUCGGGGc -3'
miRNA:   3'- gUGGaGCgGUCUCCUGGUCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 120875 0.75 0.455132
Target:  5'- gGCCcCG-CAGGGGGCUGGGUCGGGGc -3'
miRNA:   3'- gUGGaGCgGUCUCCUGGUCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 103664 0.74 0.473468
Target:  5'- -cCCUCGUC-GAGGGCCAGcugggCGAGGa -3'
miRNA:   3'- guGGAGCGGuCUCCUGGUCua---GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 128483 0.74 0.501645
Target:  5'- -gUCUCGCCgaucaGGAGGAgCAGcUCGAGGa -3'
miRNA:   3'- guGGAGCGG-----UCUCCUgGUCuAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 53588 0.74 0.511201
Target:  5'- cCGCCgUCGUgAGAGGACCaacuacGGGUCGAGc -3'
miRNA:   3'- -GUGG-AGCGgUCUCCUGG------UCUAGCUCc -5'
21431 5' -56.6 NC_004812.1 + 83885 0.73 0.530533
Target:  5'- gCGCUUCGUgGGcAGcGACgAGAUCGAGGa -3'
miRNA:   3'- -GUGGAGCGgUC-UC-CUGgUCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 77223 0.73 0.530533
Target:  5'- gAgCUCGCCGcGcAGGGCCGcGUCGAGGg -3'
miRNA:   3'- gUgGAGCGGU-C-UCCUGGUcUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 119575 0.73 0.530533
Target:  5'- gGCCUC-CCAGcaccuGGACCAGAcggucgagcUCGGGGa -3'
miRNA:   3'- gUGGAGcGGUCu----CCUGGUCU---------AGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 46767 0.73 0.540299
Target:  5'- cCGCCUCGCCAGcGGAgaucucgcCCcGGUCGAGc -3'
miRNA:   3'- -GUGGAGCGGUCuCCU--------GGuCUAGCUCc -5'
21431 5' -56.6 NC_004812.1 + 13006 0.73 0.540299
Target:  5'- uCGCCgcCGCCGGAGGcgGCCuGAUCGccGGGg -3'
miRNA:   3'- -GUGGa-GCGGUCUCC--UGGuCUAGC--UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.