miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21431 5' -56.6 NC_004812.1 + 127472 0.71 0.680469
Target:  5'- gCGCCgggCGCCGGGGGGagGGGggGAGGg -3'
miRNA:   3'- -GUGGa--GCGGUCUCCUggUCUagCUCC- -5'
21431 5' -56.6 NC_004812.1 + 112995 0.72 0.589913
Target:  5'- gCGCCgcggcCGCCgaggcAGAGGACgCAGAcgCGAGGg -3'
miRNA:   3'- -GUGGa----GCGG-----UCUCCUG-GUCUa-GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 3070 0.72 0.599951
Target:  5'- aGCCUCGCCGGuGGGCggcgggacgaCGGcgUGGGGg -3'
miRNA:   3'- gUGGAGCGGUCuCCUG----------GUCuaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 99693 0.72 0.610012
Target:  5'- cCGCCUcCGCCAG-GGACUcGGUCGcGGc -3'
miRNA:   3'- -GUGGA-GCGGUCuCCUGGuCUAGCuCC- -5'
21431 5' -56.6 NC_004812.1 + 103960 0.71 0.630174
Target:  5'- gGCC--GCCGGgGGGACCGGAaCGGGGg -3'
miRNA:   3'- gUGGagCGGUC-UCCUGGUCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 137970 0.71 0.630174
Target:  5'- -cCCUCGUC--GGGGCgGGGUCGGGGg -3'
miRNA:   3'- guGGAGCGGucUCCUGgUCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 94479 0.71 0.649335
Target:  5'- -cCCUCGCCGGcgguuucgcggccGGGGCCAGcgCGcGGu -3'
miRNA:   3'- guGGAGCGGUC-------------UCCUGGUCuaGCuCC- -5'
21431 5' -56.6 NC_004812.1 + 98702 0.71 0.670454
Target:  5'- cCGCCgCGCCGGGGGcGgCGGcgCGGGGu -3'
miRNA:   3'- -GUGGaGCGGUCUCC-UgGUCuaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 122291 0.71 0.670454
Target:  5'- gGCggCGCCGGAGGGCCGc--CGGGGg -3'
miRNA:   3'- gUGgaGCGGUCUCCUGGUcuaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 99525 0.72 0.588911
Target:  5'- -uCCgCGCCAGgagcuugGGGACCAGggCGGGGc -3'
miRNA:   3'- guGGaGCGGUC-------UCCUGGUCuaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 68331 0.73 0.560005
Target:  5'- gCGCCUCGUUaagagccaGGAGGcCCGGGUCGAaGGc -3'
miRNA:   3'- -GUGGAGCGG--------UCUCCuGGUCUAGCU-CC- -5'
21431 5' -56.6 NC_004812.1 + 77384 0.73 0.550125
Target:  5'- aCGCCa-GCCAGGcGGCCAGGUCGGcGGg -3'
miRNA:   3'- -GUGGagCGGUCUcCUGGUCUAGCU-CC- -5'
21431 5' -56.6 NC_004812.1 + 100746 0.81 0.202492
Target:  5'- gACCgCGCugCAGAGGACCAGAcCGAGGg -3'
miRNA:   3'- gUGGaGCG--GUCUCCUGGUCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 123490 0.77 0.346315
Target:  5'- cCACCUCGgCGGcGGGCCGGGcCGGGGc -3'
miRNA:   3'- -GUGGAGCgGUCuCCUGGUCUaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 73663 0.76 0.369714
Target:  5'- gUACUcgUGCUGGAGGACgAGGUCGAGGc -3'
miRNA:   3'- -GUGGa-GCGGUCUCCUGgUCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 92219 0.75 0.411049
Target:  5'- aGCCUCGCCucGGGGCCGGGa-GAGGg -3'
miRNA:   3'- gUGGAGCGGucUCCUGGUCUagCUCC- -5'
21431 5' -56.6 NC_004812.1 + 120875 0.75 0.455132
Target:  5'- gGCCcCG-CAGGGGGCUGGGUCGGGGc -3'
miRNA:   3'- gUGGaGCgGUCUCCUGGUCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 77223 0.73 0.530533
Target:  5'- gAgCUCGCCGcGcAGGGCCGcGUCGAGGg -3'
miRNA:   3'- gUgGAGCGGU-C-UCCUGGUcUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 13006 0.73 0.540299
Target:  5'- uCGCCgcCGCCGGAGGcgGCCuGAUCGccGGGg -3'
miRNA:   3'- -GUGGa-GCGGUCUCC--UGGuCUAGC--UCC- -5'
21431 5' -56.6 NC_004812.1 + 46767 0.73 0.540299
Target:  5'- cCGCCUCGCCAGcGGAgaucucgcCCcGGUCGAGc -3'
miRNA:   3'- -GUGGAGCGGUCuCCU--------GGuCUAGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.