Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21434 | 3' | -57.4 | NC_004812.1 | + | 101901 | 0.66 | 0.811978 |
Target: 5'- uAGGGCGcccCGAGGCGCggcggucGGGCcUCGg -3' miRNA: 3'- cUCCUGUa--GCUCCGCGa------CCCGaAGUa -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 125713 | 0.66 | 0.811978 |
Target: 5'- gGAGGugcCcgCGGGGCGCgGGGCcgCGc -3' miRNA: 3'- -CUCCu--GuaGCUCCGCGaCCCGaaGUa -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 97067 | 0.66 | 0.820689 |
Target: 5'- cAGcGACugCGAGGUGCUGGGCa---- -3' miRNA: 3'- cUC-CUGuaGCUCCGCGACCCGaagua -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 106773 | 0.66 | 0.84575 |
Target: 5'- aGGGGCGgcgucgggCGGGGCGCgcgggaggGGGCcUCGc -3' miRNA: 3'- cUCCUGUa-------GCUCCGCGa-------CCCGaAGUa -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 30994 | 0.66 | 0.803102 |
Target: 5'- aGGGACGggcCGGGGCGCgcgcgGGGCc---- -3' miRNA: 3'- cUCCUGUa--GCUCCGCGa----CCCGaagua -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 115433 | 0.66 | 0.803102 |
Target: 5'- cGAGcGACGUUGGGGCGgCgcgccgGGGCU-CGa -3' miRNA: 3'- -CUC-CUGUAGCUCCGC-Ga-----CCCGAaGUa -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 60852 | 0.66 | 0.803102 |
Target: 5'- aGAGGcGCGucagguUCGGGGCGCgcggcUGGGCUcCAg -3' miRNA: 3'- -CUCC-UGU------AGCUCCGCG-----ACCCGAaGUa -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 93 | 0.66 | 0.803102 |
Target: 5'- aGGGACGggcCGGGGCGCgcgcgGGGCc---- -3' miRNA: 3'- cUCCUGUa--GCUCCGCGa----CCCGaagua -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 156503 | 0.66 | 0.803102 |
Target: 5'- aGGGACGggcCGGGGCGCgcgcgGGGCc---- -3' miRNA: 3'- cUCCUGUa--GCUCCGCGa----CCCGaagua -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 87934 | 0.66 | 0.811978 |
Target: 5'- aGGGACG-CcAGGCGCUGGGUg---- -3' miRNA: 3'- cUCCUGUaGcUCCGCGACCCGaagua -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 59525 | 0.66 | 0.803102 |
Target: 5'- aGGGGGCGguagcCGAGGCGCUcGGGaccCAg -3' miRNA: 3'- -CUCCUGUa----GCUCCGCGA-CCCgaaGUa -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 5884 | 0.66 | 0.84575 |
Target: 5'- gGGGGGCG-CG-GGCGC-GGGCU-CAg -3' miRNA: 3'- -CUCCUGUaGCuCCGCGaCCCGAaGUa -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 83204 | 0.66 | 0.811978 |
Target: 5'- -cGGGCGUCGugaggccGGCGCcGGGCUg--- -3' miRNA: 3'- cuCCUGUAGCu------CCGCGaCCCGAagua -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 98498 | 0.66 | 0.820689 |
Target: 5'- uGGGGCGgcgCGGGGCGCcGGGUccCGg -3' miRNA: 3'- cUCCUGUa--GCUCCGCGaCCCGaaGUa -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 115213 | 0.66 | 0.820689 |
Target: 5'- cGAGGGCGaggggcguUCGuGGCGUUGGGggUgGUg -3' miRNA: 3'- -CUCCUGU--------AGCuCCGCGACCCgaAgUA- -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 147706 | 0.66 | 0.829227 |
Target: 5'- -cGGGgGUCGuguGGCGCgggGGGCUguaCGUg -3' miRNA: 3'- cuCCUgUAGCu--CCGCGa--CCCGAa--GUA- -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 151941 | 0.66 | 0.829227 |
Target: 5'- gGAGGugGaCGAGGCGCgccGGcGCUaCGa -3' miRNA: 3'- -CUCCugUaGCUCCGCGa--CC-CGAaGUa -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 155285 | 0.66 | 0.837583 |
Target: 5'- cGGGGAgGggCGGGGCGCggcgGGGCccgggggUCGg -3' miRNA: 3'- -CUCCUgUa-GCUCCGCGa---CCCGa------AGUa -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 121778 | 0.66 | 0.84575 |
Target: 5'- cGGGGGCAgCGAGGgcCGCUuGGGCccUCGc -3' miRNA: 3'- -CUCCUGUaGCUCC--GCGA-CCCGa-AGUa -5' |
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21434 | 3' | -57.4 | NC_004812.1 | + | 154796 | 0.66 | 0.84575 |
Target: 5'- gGAGGAgAggCGAGGCGCgcagccgGGGCc---- -3' miRNA: 3'- -CUCCUgUa-GCUCCGCGa------CCCGaagua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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