miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21434 3' -57.4 NC_004812.1 + 93 0.66 0.803102
Target:  5'- aGGGACGggcCGGGGCGCgcgcgGGGCc---- -3'
miRNA:   3'- cUCCUGUa--GCUCCGCGa----CCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 4209 0.68 0.727208
Target:  5'- cGGGGACcgCGGcGGCGUcGGGCU-CGg -3'
miRNA:   3'- -CUCCUGuaGCU-CCGCGaCCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 5884 0.66 0.84575
Target:  5'- gGGGGGCG-CG-GGCGC-GGGCU-CAg -3'
miRNA:   3'- -CUCCUGUaGCuCCGCGaCCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 16153 0.67 0.775568
Target:  5'- cGGGACAUCGAgcuccGGCGCgcccgacuggGGGCgcUCGa -3'
miRNA:   3'- cUCCUGUAGCU-----CCGCGa---------CCCGa-AGUa -5'
21434 3' -57.4 NC_004812.1 + 17539 0.68 0.686968
Target:  5'- aGGGGCgacgGUCGGGGCggacGCUGGGCU-CGc -3'
miRNA:   3'- cUCCUG----UAGCUCCG----CGACCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 19876 0.72 0.484987
Target:  5'- -cGGGCGUCGuGGGCGCgggGGGggUCGUg -3'
miRNA:   3'- cuCCUGUAGC-UCCGCGa--CCCgaAGUA- -5'
21434 3' -57.4 NC_004812.1 + 20739 0.67 0.784888
Target:  5'- cGAGGACGUCGGGGgCGCUGaaGUUg--- -3'
miRNA:   3'- -CUCCUGUAGCUCC-GCGACc-CGAagua -5'
21434 3' -57.4 NC_004812.1 + 23323 0.69 0.656273
Target:  5'- gGAGGGCGagGGGuGCGCgGGGCUcaccUCGUc -3'
miRNA:   3'- -CUCCUGUagCUC-CGCGaCCCGA----AGUA- -5'
21434 3' -57.4 NC_004812.1 + 23440 0.69 0.656273
Target:  5'- -cGGugGUCGGGGCGCgagagcGGGUcgUCGg -3'
miRNA:   3'- cuCCugUAGCUCCGCGa-----CCCGa-AGUa -5'
21434 3' -57.4 NC_004812.1 + 24873 0.68 0.717249
Target:  5'- cGGGGGCGuccUCGAGGCGCa-GGCU-CAc -3'
miRNA:   3'- -CUCCUGU---AGCUCCGCGacCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 26433 0.66 0.829227
Target:  5'- gGAGGugGaCGAGGCGCgccGGcGCUaCGa -3'
miRNA:   3'- -CUCCugUaGCUCCGCGa--CC-CGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 28135 0.7 0.584342
Target:  5'- --cGACGUCucGGCGCUGGGCgcgCAg -3'
miRNA:   3'- cucCUGUAGcuCCGCGACCCGaa-GUa -5'
21434 3' -57.4 NC_004812.1 + 29288 0.66 0.84575
Target:  5'- gGAGGAgAggCGAGGCGCgcagccgGGGCc---- -3'
miRNA:   3'- -CUCCUgUa-GCUCCGCGa------CCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 29777 0.66 0.837583
Target:  5'- cGGGGAgGggCGGGGCGCggcgGGGCccgggggUCGg -3'
miRNA:   3'- -CUCCUgUa-GCUCCGCGa---CCCGa------AGUa -5'
21434 3' -57.4 NC_004812.1 + 30994 0.66 0.803102
Target:  5'- aGGGACGggcCGGGGCGCgcgcgGGGCc---- -3'
miRNA:   3'- cUCCUGUa--GCUCCGCGa----CCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 36785 0.66 0.84575
Target:  5'- gGGGGGCG-CG-GGCGC-GGGCU-CAg -3'
miRNA:   3'- -CUCCUGUaGCuCCGCGaCCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 44324 0.66 0.837583
Target:  5'- gGAGGGCA-CGGGGCGguggUGGGCg---- -3'
miRNA:   3'- -CUCCUGUaGCUCCGCg---ACCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 44407 0.66 0.837583
Target:  5'- aGGGGCGUggauagccCGGGGCGCcGGGCg---- -3'
miRNA:   3'- cUCCUGUA--------GCUCCGCGaCCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 53331 0.69 0.67677
Target:  5'- cGGGGGgGUC--GGCGgaGGGCUUCGg -3'
miRNA:   3'- -CUCCUgUAGcuCCGCgaCCCGAAGUa -5'
21434 3' -57.4 NC_004812.1 + 53552 0.67 0.766119
Target:  5'- cGAGGGCGcCGAGGUGCUccGGGag-CAc -3'
miRNA:   3'- -CUCCUGUaGCUCCGCGA--CCCgaaGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.