miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21434 3' -57.4 NC_004812.1 + 66544 0.66 0.811978
Target:  5'- ---cGCGcUCGcAGGCGCUGGGCUcCAg -3'
miRNA:   3'- cuccUGU-AGC-UCCGCGACCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 109456 0.67 0.766119
Target:  5'- aGAGGGCGgcgCgGGGGCGCccgcGGGCUgcggCAUc -3'
miRNA:   3'- -CUCCUGUa--G-CUCCGCGa---CCCGAa---GUA- -5'
21434 3' -57.4 NC_004812.1 + 16153 0.67 0.775568
Target:  5'- cGGGACAUCGAgcuccGGCGCgcccgacuggGGGCgcUCGa -3'
miRNA:   3'- cUCCUGUAGCU-----CCGCGa---------CCCGa-AGUa -5'
21434 3' -57.4 NC_004812.1 + 72053 0.67 0.775568
Target:  5'- cGGGGgGUCgGGGGCGCUggGGGCggCGg -3'
miRNA:   3'- cUCCUgUAG-CUCCGCGA--CCCGaaGUa -5'
21434 3' -57.4 NC_004812.1 + 20739 0.67 0.784888
Target:  5'- cGAGGACGUCGGGGgCGCUGaaGUUg--- -3'
miRNA:   3'- -CUCCUGUAGCUCC-GCGACc-CGAagua -5'
21434 3' -57.4 NC_004812.1 + 71384 0.67 0.784888
Target:  5'- uGGGGACGggCGAGGCGg-GGGUcgCAg -3'
miRNA:   3'- -CUCCUGUa-GCUCCGCgaCCCGaaGUa -5'
21434 3' -57.4 NC_004812.1 + 60852 0.66 0.803102
Target:  5'- aGAGGcGCGucagguUCGGGGCGCgcggcUGGGCUcCAg -3'
miRNA:   3'- -CUCC-UGU------AGCUCCGCG-----ACCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 93 0.66 0.803102
Target:  5'- aGGGACGggcCGGGGCGCgcgcgGGGCc---- -3'
miRNA:   3'- cUCCUGUa--GCUCCGCGa----CCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 156503 0.66 0.803102
Target:  5'- aGGGACGggcCGGGGCGCgcgcgGGGCc---- -3'
miRNA:   3'- cUCCUGUa--GCUCCGCGa----CCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 115268 0.67 0.756548
Target:  5'- cGGGAC-UCGAGGcCGUcgUGGGCgUCGa -3'
miRNA:   3'- cUCCUGuAGCUCC-GCG--ACCCGaAGUa -5'
21434 3' -57.4 NC_004812.1 + 122362 0.68 0.737084
Target:  5'- cGGGGGC--CGGGGCGCgGGGCgcggCGg -3'
miRNA:   3'- -CUCCUGuaGCUCCGCGaCCCGaa--GUa -5'
21434 3' -57.4 NC_004812.1 + 69916 0.68 0.727208
Target:  5'- cGAGcGCAUCcAGGCGCUgGGGCUgCGa -3'
miRNA:   3'- -CUCcUGUAGcUCCGCGA-CCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 153644 0.7 0.584342
Target:  5'- --cGACGUCucGGCGCUGGGCgcgCAg -3'
miRNA:   3'- cucCUGUAGcuCCGCGACCCGaa-GUa -5'
21434 3' -57.4 NC_004812.1 + 137041 0.7 0.60483
Target:  5'- gGAGGugGcCGGGGUGguggccggcCUGGGCUUCGc -3'
miRNA:   3'- -CUCCugUaGCUCCGC---------GACCCGAAGUa -5'
21434 3' -57.4 NC_004812.1 + 148948 0.69 0.656273
Target:  5'- -cGGugGUCGGGGCGCgagagcGGGUcgUCGg -3'
miRNA:   3'- cuCCugUAGCUCCGCGa-----CCCGa-AGUa -5'
21434 3' -57.4 NC_004812.1 + 148831 0.69 0.656273
Target:  5'- gGAGGGCGagGGGuGCGCgGGGCUcaccUCGUc -3'
miRNA:   3'- -CUCCUGUagCUC-CGCGaCCCGA----AGUA- -5'
21434 3' -57.4 NC_004812.1 + 63377 0.69 0.666536
Target:  5'- -cGGAUcUCGAGGCGCgGGGCc---- -3'
miRNA:   3'- cuCCUGuAGCUCCGCGaCCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 53331 0.69 0.67677
Target:  5'- cGGGGGgGUC--GGCGgaGGGCUUCGg -3'
miRNA:   3'- -CUCCUgUAGcuCCGCgaCCCGAAGUa -5'
21434 3' -57.4 NC_004812.1 + 24873 0.68 0.717249
Target:  5'- cGGGGGCGuccUCGAGGCGCa-GGCU-CAc -3'
miRNA:   3'- -CUCCUGU---AGCUCCGCGacCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 67772 0.68 0.727208
Target:  5'- gGAGGcgGCGgccCGGGGCGCggGcGGCUUCGg -3'
miRNA:   3'- -CUCC--UGUa--GCUCCGCGa-C-CCGAAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.