miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21434 3' -57.4 NC_004812.1 + 98014 1.05 0.003248
Target:  5'- cGAGGACAUCGAGGCGCUGGGCUUCAUc -3'
miRNA:   3'- -CUCCUGUAGCUCCGCGACCCGAAGUA- -5'
21434 3' -57.4 NC_004812.1 + 147877 0.73 0.42935
Target:  5'- cGGGGcCGUCGAGGCGUucgGGGCUcgCGa -3'
miRNA:   3'- -CUCCuGUAGCUCCGCGa--CCCGAa-GUa -5'
21434 3' -57.4 NC_004812.1 + 81990 0.72 0.456714
Target:  5'- cGGGGGcCGUCGAGGaGCUGGGCg---- -3'
miRNA:   3'- -CUCCU-GUAGCUCCgCGACCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 19876 0.72 0.484987
Target:  5'- -cGGGCGUCGuGGGCGCgggGGGggUCGUg -3'
miRNA:   3'- cuCCUGUAGC-UCCGCGa--CCCgaAGUA- -5'
21434 3' -57.4 NC_004812.1 + 153644 0.7 0.584342
Target:  5'- --cGACGUCucGGCGCUGGGCgcgCAg -3'
miRNA:   3'- cucCUGUAGcuCCGCGACCCGaa-GUa -5'
21434 3' -57.4 NC_004812.1 + 28135 0.7 0.584342
Target:  5'- --cGACGUCucGGCGCUGGGCgcgCAg -3'
miRNA:   3'- cucCUGUAGcuCCGCGACCCGaa-GUa -5'
21434 3' -57.4 NC_004812.1 + 137041 0.7 0.60483
Target:  5'- gGAGGugGcCGGGGUGguggccggcCUGGGCUUCGc -3'
miRNA:   3'- -CUCCugUaGCUCCGC---------GACCCGAAGUa -5'
21434 3' -57.4 NC_004812.1 + 152680 0.7 0.615108
Target:  5'- cGGGGGCAgCGAgGGCGCUuGGGCccUCGc -3'
miRNA:   3'- -CUCCUGUaGCU-CCGCGA-CCCGa-AGUa -5'
21434 3' -57.4 NC_004812.1 + 146794 0.69 0.64599
Target:  5'- cGAGGGCcgCGAgGGCgGCUGGGaaUCGa -3'
miRNA:   3'- -CUCCUGuaGCU-CCG-CGACCCgaAGUa -5'
21434 3' -57.4 NC_004812.1 + 148831 0.69 0.656273
Target:  5'- gGAGGGCGagGGGuGCGCgGGGCUcaccUCGUc -3'
miRNA:   3'- -CUCCUGUagCUC-CGCGaCCCGA----AGUA- -5'
21434 3' -57.4 NC_004812.1 + 148948 0.69 0.656273
Target:  5'- -cGGugGUCGGGGCGCgagagcGGGUcgUCGg -3'
miRNA:   3'- cuCCugUAGCUCCGCGa-----CCCGa-AGUa -5'
21434 3' -57.4 NC_004812.1 + 23440 0.69 0.656273
Target:  5'- -cGGugGUCGGGGCGCgagagcGGGUcgUCGg -3'
miRNA:   3'- cuCCugUAGCUCCGCGa-----CCCGa-AGUa -5'
21434 3' -57.4 NC_004812.1 + 23323 0.69 0.656273
Target:  5'- gGAGGGCGagGGGuGCGCgGGGCUcaccUCGUc -3'
miRNA:   3'- -CUCCUGUagCUC-CGCGaCCCGA----AGUA- -5'
21434 3' -57.4 NC_004812.1 + 63377 0.69 0.666536
Target:  5'- -cGGAUcUCGAGGCGCgGGGCc---- -3'
miRNA:   3'- cuCCUGuAGCUCCGCGaCCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 53331 0.69 0.67677
Target:  5'- cGGGGGgGUC--GGCGgaGGGCUUCGg -3'
miRNA:   3'- -CUCCUgUAGcuCCGCgaCCCGAAGUa -5'
21434 3' -57.4 NC_004812.1 + 107227 0.69 0.67677
Target:  5'- -uGGGCGUCGAGGCaCaGGGCggCGa -3'
miRNA:   3'- cuCCUGUAGCUCCGcGaCCCGaaGUa -5'
21434 3' -57.4 NC_004812.1 + 17539 0.68 0.686968
Target:  5'- aGGGGCgacgGUCGGGGCggacGCUGGGCU-CGc -3'
miRNA:   3'- cUCCUG----UAGCUCCG----CGACCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 82054 0.68 0.686968
Target:  5'- cGAGGACGUgGuGGCGC-GGGUgcCGUg -3'
miRNA:   3'- -CUCCUGUAgCuCCGCGaCCCGaaGUA- -5'
21434 3' -57.4 NC_004812.1 + 24873 0.68 0.717249
Target:  5'- cGGGGGCGuccUCGAGGCGCa-GGCU-CAc -3'
miRNA:   3'- -CUCCUGU---AGCUCCGCGacCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 69916 0.68 0.727208
Target:  5'- cGAGcGCAUCcAGGCGCUgGGGCUgCGa -3'
miRNA:   3'- -CUCcUGUAGcUCCGCGA-CCCGAaGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.