miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21434 5' -51.9 NC_004812.1 + 94934 0.66 0.987962
Target:  5'- uGUuCGCGaaccacaucGCCUCGcuCUUCGUCcccgGGCCg -3'
miRNA:   3'- -CAuGCGC---------CGGAGCuuGAAGCAG----UUGG- -5'
21434 5' -51.9 NC_004812.1 + 127693 0.66 0.987962
Target:  5'- -gGCgGCGGCgUCGucg-UCGUCGGCg -3'
miRNA:   3'- caUG-CGCCGgAGCuugaAGCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 54078 0.66 0.986382
Target:  5'- gGU-CGCGGCCUucgCGGGCUUCagcuUCAuguCCg -3'
miRNA:   3'- -CAuGCGCCGGA---GCUUGAAGc---AGUu--GG- -5'
21434 5' -51.9 NC_004812.1 + 49346 0.66 0.987962
Target:  5'- -gACGCGGCggUCGAGCUgaCG-CAGCUc -3'
miRNA:   3'- caUGCGCCGg-AGCUUGAa-GCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 38974 0.66 0.990693
Target:  5'- -cACGuCGGCCUCcg----UGUCGGCCa -3'
miRNA:   3'- caUGC-GCCGGAGcuugaaGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 121815 0.66 0.988552
Target:  5'- -gGgGCGGCCUCGGaggcggaggccgggcGCUUgCGggccgcggCGGCCg -3'
miRNA:   3'- caUgCGCCGGAGCU---------------UGAA-GCa-------GUUGG- -5'
21434 5' -51.9 NC_004812.1 + 54559 0.66 0.989396
Target:  5'- -gGCGCGGCCcCGGcCUcgccaucguuaUCGUCAuCUg -3'
miRNA:   3'- caUGCGCCGGaGCUuGA-----------AGCAGUuGG- -5'
21434 5' -51.9 NC_004812.1 + 149601 0.66 0.990693
Target:  5'- uGUGCGCcgacccGCCgcggCGAugUUCGUgCGACg -3'
miRNA:   3'- -CAUGCGc-----CGGa---GCUugAAGCA-GUUGg -5'
21434 5' -51.9 NC_004812.1 + 31540 0.66 0.987962
Target:  5'- -cACGCGGUCUgcacgCGAGCgaCGaacgCGACCu -3'
miRNA:   3'- caUGCGCCGGA-----GCUUGaaGCa---GUUGG- -5'
21434 5' -51.9 NC_004812.1 + 83904 0.66 0.987962
Target:  5'- -gGCGUGGUC-CGAGCgUUGUCGgaaggcguugcuGCCg -3'
miRNA:   3'- caUGCGCCGGaGCUUGaAGCAGU------------UGG- -5'
21434 5' -51.9 NC_004812.1 + 8352 0.66 0.987962
Target:  5'- -gGCGCGGCCgccccACcgCGUCGGCg -3'
miRNA:   3'- caUGCGCCGGagcu-UGaaGCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 131492 0.66 0.987962
Target:  5'- uUAUGCGGCCcacgccccgGAACgcgCGUCGGCg -3'
miRNA:   3'- cAUGCGCCGGag-------CUUGaa-GCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 18117 0.66 0.986382
Target:  5'- -gACGCGGCgCUCGuaccGCUccgCGUcCAGCa -3'
miRNA:   3'- caUGCGCCG-GAGCu---UGAa--GCA-GUUGg -5'
21434 5' -51.9 NC_004812.1 + 25758 0.66 0.989396
Target:  5'- --cCGgGGCCcccacUUGAGCgucgaggccgUCGUCAGCCc -3'
miRNA:   3'- cauGCgCCGG-----AGCUUGa---------AGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 91523 0.66 0.990693
Target:  5'- cGgcCGgGGCCUgCGGACgcgagcccgCGUCcGCCg -3'
miRNA:   3'- -CauGCgCCGGA-GCUUGaa-------GCAGuUGG- -5'
21434 5' -51.9 NC_004812.1 + 129459 0.66 0.987962
Target:  5'- -cGCGCGGCCgccagccCGGGCa-CGgCGGCCa -3'
miRNA:   3'- caUGCGCCGGa------GCUUGaaGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 127756 0.66 0.989396
Target:  5'- -gGCGCGGCggCGGGgUccgCGUCGGCg -3'
miRNA:   3'- caUGCGCCGgaGCUUgAa--GCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 74851 0.66 0.987962
Target:  5'- --cCGCGGCCUCcagcGAGCgcCGcagggCGGCCg -3'
miRNA:   3'- cauGCGCCGGAG----CUUGaaGCa----GUUGG- -5'
21434 5' -51.9 NC_004812.1 + 154868 0.66 0.990693
Target:  5'- -gGCGCGGgCUCGGGCcgCGgaggCGcgcgggGCCg -3'
miRNA:   3'- caUGCGCCgGAGCUUGaaGCa---GU------UGG- -5'
21434 5' -51.9 NC_004812.1 + 128233 0.66 0.992295
Target:  5'- --cUGCGGCUgcaccgggagggcgUCGGaacccaggacccccGCUUCGUCAGCg -3'
miRNA:   3'- cauGCGCCGG--------------AGCU--------------UGAAGCAGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.