miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21434 5' -51.9 NC_004812.1 + 49471 0.71 0.899643
Target:  5'- -gGCGCugguucgccugacGGCgCUgGAGC-UCGUCAACCg -3'
miRNA:   3'- caUGCG-------------CCG-GAgCUUGaAGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 151565 0.72 0.865618
Target:  5'- -gGCGCGGCgccCUCGcGCgcccccggcccggggUCGUCGGCCu -3'
miRNA:   3'- caUGCGCCG---GAGCuUGa--------------AGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 32404 0.71 0.886811
Target:  5'- --cCGCGGCCUCGGucgccGCcgCGggcgCGGCCg -3'
miRNA:   3'- cauGCGCCGGAGCU-----UGaaGCa---GUUGG- -5'
21434 5' -51.9 NC_004812.1 + 108595 0.71 0.886811
Target:  5'- -aGCGCGGCCUaaccaCGcuCUUCGUgcACCa -3'
miRNA:   3'- caUGCGCCGGA-----GCuuGAAGCAguUGG- -5'
21434 5' -51.9 NC_004812.1 + 42711 0.71 0.893671
Target:  5'- uGUACGCgGGCCgCGGGCggUUGgccgCGGCCa -3'
miRNA:   3'- -CAUGCG-CCGGaGCUUGa-AGCa---GUUGG- -5'
21434 5' -51.9 NC_004812.1 + 100788 0.71 0.893671
Target:  5'- cGUGCggugGCGGCCUCGGGCc-CGaaGACCu -3'
miRNA:   3'- -CAUG----CGCCGGAGCUUGaaGCagUUGG- -5'
21434 5' -51.9 NC_004812.1 + 94395 0.71 0.893671
Target:  5'- cGUACGCGGCggCGGugg-CGUUGGCCg -3'
miRNA:   3'- -CAUGCGCCGgaGCUugaaGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 123576 0.71 0.893671
Target:  5'- -gGCGCGGCCgggcUCGAGuCguccgUCGUCGGgCg -3'
miRNA:   3'- caUGCGCCGG----AGCUU-Ga----AGCAGUUgG- -5'
21434 5' -51.9 NC_004812.1 + 145076 0.71 0.896349
Target:  5'- -aGC-CGGCCUCGggUgguacggacacacCGUCAACCu -3'
miRNA:   3'- caUGcGCCGGAGCuuGaa-----------GCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 128028 0.72 0.849123
Target:  5'- -gGCGCGGCCgUCGAGCg-CGggCAGCa -3'
miRNA:   3'- caUGCGCCGG-AGCUUGaaGCa-GUUGg -5'
21434 5' -51.9 NC_004812.1 + 67515 0.72 0.849123
Target:  5'- --uCGCGcGCCUCGAACUcggCGUUGcgcGCCa -3'
miRNA:   3'- cauGCGC-CGGAGCUUGAa--GCAGU---UGG- -5'
21434 5' -51.9 NC_004812.1 + 112814 0.72 0.840949
Target:  5'- uGUGgGCGcGCCUCGGaagGCggCGUCGGCg -3'
miRNA:   3'- -CAUgCGC-CGGAGCU---UGaaGCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 74322 0.79 0.504689
Target:  5'- -cGCGCGGgCCUCGAGCgcccgaaCGUCGACg -3'
miRNA:   3'- caUGCGCC-GGAGCUUGaa-----GCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 105282 0.78 0.534577
Target:  5'- -gACGuCGGCCUCu-ACUUCGUCGguGCCg -3'
miRNA:   3'- caUGC-GCCGGAGcuUGAAGCAGU--UGG- -5'
21434 5' -51.9 NC_004812.1 + 33681 0.77 0.606362
Target:  5'- -cACGCGcGCCUCGGGCaccggCGUCGcgGCCg -3'
miRNA:   3'- caUGCGC-CGGAGCUUGaa---GCAGU--UGG- -5'
21434 5' -51.9 NC_004812.1 + 103185 0.74 0.729974
Target:  5'- -aGCGCGGCCcCGGGCUccUCGgUGGCCg -3'
miRNA:   3'- caUGCGCCGGaGCUUGA--AGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 113239 0.74 0.739931
Target:  5'- -cGCGCGGCCgCGGAgcgCGUCAGCg -3'
miRNA:   3'- caUGCGCCGGaGCUUgaaGCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 63089 0.73 0.778691
Target:  5'- -cGCGCcccGCCUCGGcCUUCGUC-ACCu -3'
miRNA:   3'- caUGCGc--CGGAGCUuGAAGCAGuUGG- -5'
21434 5' -51.9 NC_004812.1 + 76848 0.73 0.778691
Target:  5'- cUGCGCGGCgUCGGGCaggcaCGUCcACCc -3'
miRNA:   3'- cAUGCGCCGgAGCUUGaa---GCAGuUGG- -5'
21434 5' -51.9 NC_004812.1 + 117113 0.73 0.81528
Target:  5'- -gGCGCGGCCUCcGGGCggCGcgCcACCg -3'
miRNA:   3'- caUGCGCCGGAG-CUUGaaGCa-GuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.