miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21434 5' -51.9 NC_004812.1 + 1747 0.67 0.978434
Target:  5'- --cCGCGGCC-CGAGCccgcgcccccUCG-CAGCCg -3'
miRNA:   3'- cauGCGCCGGaGCUUGa---------AGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 2184 0.66 0.987962
Target:  5'- -gGCgGCGGCgUCGucg-UCGUCGGCg -3'
miRNA:   3'- caUG-CGCCGgAGCuugaAGCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 2248 0.66 0.989396
Target:  5'- -gGCGCGGCggCGGGgUccgCGUCGGCg -3'
miRNA:   3'- caUGCGCCGgaGCUUgAa--GCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 2520 0.72 0.849123
Target:  5'- -gGCGCGGCCgUCGAGCg-CGggCAGCa -3'
miRNA:   3'- caUGCGCCGG-AGCUUGaaGCa-GUUGg -5'
21434 5' -51.9 NC_004812.1 + 3242 0.68 0.967486
Target:  5'- -gGCGCGGCCggagcCGGGC-UCGggcgGGCCg -3'
miRNA:   3'- caUGCGCCGGa----GCUUGaAGCag--UUGG- -5'
21434 5' -51.9 NC_004812.1 + 3642 0.67 0.984648
Target:  5'- -cGCGCGGCgC-CGcccGCgucugCGUCGGCCa -3'
miRNA:   3'- caUGCGCCG-GaGCu--UGaa---GCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 3951 0.66 0.987962
Target:  5'- -cGCGCGGCCgccagccCGGGCa-CGgCGGCCa -3'
miRNA:   3'- caUGCGCCGGa------GCUUGaaGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 4657 0.68 0.957031
Target:  5'- ---gGCGGCCUCGuAGCgccggcgcgccUCGUCcACCu -3'
miRNA:   3'- caugCGCCGGAGC-UUGa----------AGCAGuUGG- -5'
21434 5' -51.9 NC_004812.1 + 5242 0.69 0.944489
Target:  5'- --uCGCGGCCgUCGGggcGCgccgaGUCGGCCg -3'
miRNA:   3'- cauGCGCCGG-AGCU---UGaag--CAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 5395 0.68 0.973366
Target:  5'- -cGCGgGGCCggGGGCgUCGcCGGCCc -3'
miRNA:   3'- caUGCgCCGGagCUUGaAGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 8352 0.66 0.987962
Target:  5'- -gGCGCGGCCgccccACcgCGUCGGCg -3'
miRNA:   3'- caUGCGCCGGagcu-UGaaGCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 8808 0.68 0.964225
Target:  5'- -cACGCGaGCCUCGccagccccgagAGCcUCGgCAGCCu -3'
miRNA:   3'- caUGCGC-CGGAGC-----------UUGaAGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 9370 0.74 0.759544
Target:  5'- -cACgGCGGCCaUGAACUUCGU-GGCCg -3'
miRNA:   3'- caUG-CGCCGGaGCUUGAAGCAgUUGG- -5'
21434 5' -51.9 NC_004812.1 + 11125 0.67 0.984648
Target:  5'- cGUACGaacucagaucGCCguaGAGCUcgUCGUCGGCCa -3'
miRNA:   3'- -CAUGCgc--------CGGag-CUUGA--AGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 12383 0.73 0.807267
Target:  5'- -cGCGCGGCCgggagggcgaagagcCGAACcUCGUC-GCCg -3'
miRNA:   3'- caUGCGCCGGa--------------GCUUGaAGCAGuUGG- -5'
21434 5' -51.9 NC_004812.1 + 12919 0.66 0.989396
Target:  5'- -gGCGCGGCgagcgCUCGAGCg-CGaCGAUCg -3'
miRNA:   3'- caUGCGCCG-----GAGCUUGaaGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 14179 0.73 0.824019
Target:  5'- -cGCGCGGCCgacgcgCGGACaacugCGUCGccgcGCCa -3'
miRNA:   3'- caUGCGCCGGa-----GCUUGaa---GCAGU----UGG- -5'
21434 5' -51.9 NC_004812.1 + 14637 0.68 0.964225
Target:  5'- -cGCGCGGCCUCcagccgguGCUcCGcCAGCUc -3'
miRNA:   3'- caUGCGCCGGAGcu------UGAaGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 14840 0.67 0.982751
Target:  5'- -cGCGCGGCCguUCGAcgccGCccCG-CGGCCg -3'
miRNA:   3'- caUGCGCCGG--AGCU----UGaaGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 15219 0.69 0.934918
Target:  5'- -cGCGCGGCCUggcCGAcuGCUUCGcgCAgggcggACCc -3'
miRNA:   3'- caUGCGCCGGA---GCU--UGAAGCa-GU------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.