miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21434 5' -51.9 NC_004812.1 + 98058 1.12 0.004958
Target:  5'- aGUACGCGGCCUCGAACUUCGUCAACCu -3'
miRNA:   3'- -CAUGCGCCGGAGCUUGAAGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 76117 0.85 0.253427
Target:  5'- -gGCgGCGGCCUCGAGC-UCGUCGGCg -3'
miRNA:   3'- caUG-CGCCGGAGCUUGaAGCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 108292 0.82 0.360311
Target:  5'- --uUGCGGCCUCGGccGCggCGUCGGCCu -3'
miRNA:   3'- cauGCGCCGGAGCU--UGaaGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 74322 0.79 0.504689
Target:  5'- -cGCGCGGgCCUCGAGCgcccgaaCGUCGACg -3'
miRNA:   3'- caUGCGCC-GGAGCUUGaa-----GCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 105282 0.78 0.534577
Target:  5'- -gACGuCGGCCUCu-ACUUCGUCGguGCCg -3'
miRNA:   3'- caUGC-GCCGGAGcuUGAAGCAGU--UGG- -5'
21434 5' -51.9 NC_004812.1 + 91084 0.77 0.585644
Target:  5'- uUGCGCcgcuuGGCCUCGGAC-UCGcCGGCCu -3'
miRNA:   3'- cAUGCG-----CCGGAGCUUGaAGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 33681 0.77 0.606362
Target:  5'- -cACGCGcGCCUCGGGCaccggCGUCGcgGCCg -3'
miRNA:   3'- caUGCGC-CGGAGCUUGaa---GCAGU--UGG- -5'
21434 5' -51.9 NC_004812.1 + 116004 0.76 0.637567
Target:  5'- cUACG-GcGCCUCGGACUuuuUCGUCAGCUc -3'
miRNA:   3'- cAUGCgC-CGGAGCUUGA---AGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 122817 0.76 0.64797
Target:  5'- uGUGgGCGGCgcagCGGGCgaugUCGUCGGCCg -3'
miRNA:   3'- -CAUgCGCCGga--GCUUGa---AGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 91900 0.75 0.679069
Target:  5'- --cCGCGGCCUCGGGgaa-GUCGGCCu -3'
miRNA:   3'- cauGCGCCGGAGCUUgaagCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 103185 0.74 0.729974
Target:  5'- -aGCGCGGCCcCGGGCUccUCGgUGGCCg -3'
miRNA:   3'- caUGCGCCGGaGCUUGA--AGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 95572 0.74 0.729974
Target:  5'- cGUG-GCGGUCUCGccGCUcgUCGUCGGCCu -3'
miRNA:   3'- -CAUgCGCCGGAGCu-UGA--AGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 113239 0.74 0.739931
Target:  5'- -cGCGCGGCCgCGGAgcgCGUCAGCg -3'
miRNA:   3'- caUGCGCCGGaGCUUgaaGCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 46044 0.74 0.739931
Target:  5'- cGUGCGCGGCCaCGAACgccggcaCGUCcgggcaGGCCg -3'
miRNA:   3'- -CAUGCGCCGGaGCUUGaa-----GCAG------UUGG- -5'
21434 5' -51.9 NC_004812.1 + 98538 0.74 0.749791
Target:  5'- uGUGCGCGGCCUCG-GCgcCGggcGCCg -3'
miRNA:   3'- -CAUGCGCCGGAGCuUGaaGCaguUGG- -5'
21434 5' -51.9 NC_004812.1 + 9370 0.74 0.759544
Target:  5'- -cACgGCGGCCaUGAACUUCGU-GGCCg -3'
miRNA:   3'- caUG-CGCCGGaGCUUGAAGCAgUUGG- -5'
21434 5' -51.9 NC_004812.1 + 109452 0.74 0.769181
Target:  5'- -cGCGCGGCCUgGAAaaUCGagCGGCCc -3'
miRNA:   3'- caUGCGCCGGAgCUUgaAGCa-GUUGG- -5'
21434 5' -51.9 NC_004812.1 + 76848 0.73 0.778691
Target:  5'- cUGCGCGGCgUCGGGCaggcaCGUCcACCc -3'
miRNA:   3'- cAUGCGCCGgAGCUUGaa---GCAGuUGG- -5'
21434 5' -51.9 NC_004812.1 + 63089 0.73 0.778691
Target:  5'- -cGCGCcccGCCUCGGcCUUCGUC-ACCu -3'
miRNA:   3'- caUGCGc--CGGAGCUuGAAGCAGuUGG- -5'
21434 5' -51.9 NC_004812.1 + 107744 0.73 0.788065
Target:  5'- --cCGCGGCCgCGAACUgCGUCuuggggAGCCg -3'
miRNA:   3'- cauGCGCCGGaGCUUGAaGCAG------UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.