miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 3' -61 NC_004812.1 + 96401 1.08 0.001254
Target:  5'- aCGCCGCGCUCGCGCUCGAGUCGCUCAu -3'
miRNA:   3'- -GCGGCGCGAGCGCGAGCUCAGCGAGU- -5'
21439 3' -61 NC_004812.1 + 12990 0.78 0.158652
Target:  5'- gGCCGCGCUCGCGCUCucGcCGC-CGc -3'
miRNA:   3'- gCGGCGCGAGCGCGAGcuCaGCGaGU- -5'
21439 3' -61 NC_004812.1 + 112288 0.78 0.166606
Target:  5'- gGCCGCGCcCGCccgggccgaGCUCGAGUCGCg-- -3'
miRNA:   3'- gCGGCGCGaGCG---------CGAGCUCAGCGagu -5'
21439 3' -61 NC_004812.1 + 113678 0.76 0.202095
Target:  5'- gCGgCGUGCUCGCGCUCGAcgaGCUCu -3'
miRNA:   3'- -GCgGCGCGAGCGCGAGCUcagCGAGu -5'
21439 3' -61 NC_004812.1 + 66528 0.76 0.206967
Target:  5'- aCGCCGCgguaccGCUCGCGCUCGcAGgCGCUgGg -3'
miRNA:   3'- -GCGGCG------CGAGCGCGAGC-UCaGCGAgU- -5'
21439 3' -61 NC_004812.1 + 100684 0.75 0.238364
Target:  5'- gGCCcgGCGCUCGCGCgggCGuGUCGCa-- -3'
miRNA:   3'- gCGG--CGCGAGCGCGa--GCuCAGCGagu -5'
21439 3' -61 NC_004812.1 + 143679 0.75 0.255507
Target:  5'- gGCCccgGCGaucgUCGCGCUCGAG-CGCUCGc -3'
miRNA:   3'- gCGG---CGCg---AGCGCGAGCUCaGCGAGU- -5'
21439 3' -61 NC_004812.1 + 61210 0.75 0.261443
Target:  5'- uCGCCGgGCgcgCGgGCUuccgggucgcgCGAGUCGCUCGu -3'
miRNA:   3'- -GCGGCgCGa--GCgCGA-----------GCUCAGCGAGU- -5'
21439 3' -61 NC_004812.1 + 111745 0.74 0.273649
Target:  5'- aCGCCGCGCUCGUGCgCGcG-CGCUa- -3'
miRNA:   3'- -GCGGCGCGAGCGCGaGCuCaGCGAgu -5'
21439 3' -61 NC_004812.1 + 27099 0.74 0.286307
Target:  5'- uGCCGCGC-CGUGCUgGAGgCGCUg- -3'
miRNA:   3'- gCGGCGCGaGCGCGAgCUCaGCGAgu -5'
21439 3' -61 NC_004812.1 + 152608 0.74 0.286307
Target:  5'- uGCCGCGC-CGUGCUgGAGgCGCUg- -3'
miRNA:   3'- gCGGCGCGaGCGCGAgCUCaGCGAgu -5'
21439 3' -61 NC_004812.1 + 71961 0.74 0.279921
Target:  5'- uGCCGCGacgCGCGCcgCGGGagGCUCAc -3'
miRNA:   3'- gCGGCGCga-GCGCGa-GCUCagCGAGU- -5'
21439 3' -61 NC_004812.1 + 137092 0.73 0.312999
Target:  5'- gCGCCGCGCgguUCGCGCgCGAGUacacgaCGCUg- -3'
miRNA:   3'- -GCGGCGCG---AGCGCGaGCUCA------GCGAgu -5'
21439 3' -61 NC_004812.1 + 154474 0.73 0.327036
Target:  5'- gGCgGCGCggcCGgGCUCGAGUCGUccgUCGu -3'
miRNA:   3'- gCGgCGCGa--GCgCGAGCUCAGCG---AGU- -5'
21439 3' -61 NC_004812.1 + 27802 0.73 0.308878
Target:  5'- gCGCCGCGCUcgccuucgacccgcgCGCGCUgGccUCGCUCGc -3'
miRNA:   3'- -GCGGCGCGA---------------GCGCGAgCucAGCGAGU- -5'
21439 3' -61 NC_004812.1 + 95587 0.73 0.334228
Target:  5'- gGCCGCGCcCGCGCgCGGG-CGCggCAg -3'
miRNA:   3'- gCGGCGCGaGCGCGaGCUCaGCGa-GU- -5'
21439 3' -61 NC_004812.1 + 123573 0.73 0.327036
Target:  5'- gGCgGCGCggcCGgGCUCGAGUCGUccgUCGu -3'
miRNA:   3'- gCGgCGCGa--GCgCGAGCUCAGCG---AGU- -5'
21439 3' -61 NC_004812.1 + 153310 0.73 0.308878
Target:  5'- gCGCCGCGCUcgccuucgacccgcgCGCGCUgGccUCGCUCGc -3'
miRNA:   3'- -GCGGCGCGA---------------GCGCGAgCucAGCGAGU- -5'
21439 3' -61 NC_004812.1 + 41778 0.73 0.306153
Target:  5'- gCGCCGCGcCUCGgcCGCUCGGGcggccagacCGCUCGa -3'
miRNA:   3'- -GCGGCGC-GAGC--GCGAGCUCa--------GCGAGU- -5'
21439 3' -61 NC_004812.1 + 154083 0.72 0.379777
Target:  5'- gCGCCGUGCUgccCGCGCUCGAcgGcCGCg-- -3'
miRNA:   3'- -GCGGCGCGA---GCGCGAGCU--CaGCGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.