miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21444 5' -59.9 NC_004812.1 + 107991 0.66 0.764316
Target:  5'- gGGCGUUCCCgcacgcgCGUCGUCcggaUGGCcGCGGc -3'
miRNA:   3'- gCCGCAGGGG-------GCAGCGG----AUCGuUGCU- -5'
21444 5' -59.9 NC_004812.1 + 123901 0.66 0.765229
Target:  5'- gGGCGgCCCCgaCGUcCGCCaugcuGCGGCGGg -3'
miRNA:   3'- gCCGCaGGGG--GCA-GCGGau---CGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 83837 0.66 0.774297
Target:  5'- gGGCG-CCCggCCGUCuCCggggggAGCGGCGGg -3'
miRNA:   3'- gCCGCaGGG--GGCAGcGGa-----UCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 1939 0.66 0.774297
Target:  5'- gGGCGcUCCgCCCGUCGg--GGgGACGGg -3'
miRNA:   3'- gCCGC-AGG-GGGCAGCggaUCgUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 42389 0.66 0.75605
Target:  5'- cCGGUGUUCCCCGcccUCGUC-GGCAuCGu -3'
miRNA:   3'- -GCCGCAGGGGGC---AGCGGaUCGUuGCu -5'
21444 5' -59.9 NC_004812.1 + 69622 0.66 0.74677
Target:  5'- gGuGCGUgCCCCCGcCGCUccGGCAcccGCGGg -3'
miRNA:   3'- gC-CGCA-GGGGGCaGCGGa-UCGU---UGCU- -5'
21444 5' -59.9 NC_004812.1 + 3968 0.66 0.765229
Target:  5'- cCGGCGcCCCCC--CGCCgcGCGcCGGc -3'
miRNA:   3'- -GCCGCaGGGGGcaGCGGauCGUuGCU- -5'
21444 5' -59.9 NC_004812.1 + 103542 0.66 0.765229
Target:  5'- gGGCGgCCCUugagCGcCGCCUGGCggUGc -3'
miRNA:   3'- gCCGCaGGGG----GCaGCGGAUCGuuGCu -5'
21444 5' -59.9 NC_004812.1 + 106698 0.66 0.75605
Target:  5'- uGGCGaUCCagCCGUCGCugcgcgugcugCUGGCgGGCGAg -3'
miRNA:   3'- gCCGC-AGGg-GGCAGCG-----------GAUCG-UUGCU- -5'
21444 5' -59.9 NC_004812.1 + 124024 0.66 0.74677
Target:  5'- gGGCaUCCCCCGcCGCgggcgGGCcGCGGc -3'
miRNA:   3'- gCCGcAGGGGGCaGCGga---UCGuUGCU- -5'
21444 5' -59.9 NC_004812.1 + 47714 0.66 0.74677
Target:  5'- gGGCG-CCCggCCGgCGCgaGGCGGCGGg -3'
miRNA:   3'- gCCGCaGGG--GGCaGCGgaUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 135449 0.66 0.74677
Target:  5'- uCGGCGUCCCgCGgcaCGCCgagacccccGCcGCGGc -3'
miRNA:   3'- -GCCGCAGGGgGCa--GCGGau-------CGuUGCU- -5'
21444 5' -59.9 NC_004812.1 + 96749 0.66 0.772492
Target:  5'- uCGGCGUCUacgugcggcgcgCCGUCGCgaggaGGCGGCGGg -3'
miRNA:   3'- -GCCGCAGGg-----------GGCAGCGga---UCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 120059 0.66 0.75605
Target:  5'- gGGC-UCCCCuCG-CGCCcGGCGACc- -3'
miRNA:   3'- gCCGcAGGGG-GCaGCGGaUCGUUGcu -5'
21444 5' -59.9 NC_004812.1 + 34604 0.66 0.765229
Target:  5'- gGGCcauGUCCCCCGaUCGCacgaCGGCGGg -3'
miRNA:   3'- gCCG---CAGGGGGC-AGCGgaucGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 73244 0.66 0.75605
Target:  5'- gGGCGgcccgCCCCCaGgcgggcCGCC-AGCAGCGc -3'
miRNA:   3'- gCCGCa----GGGGG-Ca-----GCGGaUCGUUGCu -5'
21444 5' -59.9 NC_004812.1 + 123585 0.66 0.774297
Target:  5'- gGGCucgaGUCgUCCGUCGUCgggcgggcgGGCGGCGGa -3'
miRNA:   3'- gCCG----CAGgGGGCAGCGGa--------UCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 146364 0.66 0.764316
Target:  5'- gCGGCGUucgUCCUCGUCGCgCUgaucucaGGCGGCc- -3'
miRNA:   3'- -GCCGCA---GGGGGCAGCG-GA-------UCGUUGcu -5'
21444 5' -59.9 NC_004812.1 + 145539 0.66 0.792072
Target:  5'- gCGGCG-CCCCgGuUCGCgCUGGUccCGGg -3'
miRNA:   3'- -GCCGCaGGGGgC-AGCG-GAUCGuuGCU- -5'
21444 5' -59.9 NC_004812.1 + 42204 0.66 0.765229
Target:  5'- aGGCGUCUCCCGUUGacuaCCUGacGCc-CGAg -3'
miRNA:   3'- gCCGCAGGGGGCAGC----GGAU--CGuuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.