miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21444 5' -59.9 NC_004812.1 + 132564 1.08 0.001726
Target:  5'- gCGGCGUCCCCCGUCGCCUAGCAACGAc -3'
miRNA:   3'- -GCCGCAGGGGGCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 7055 1.08 0.001726
Target:  5'- gCGGCGUCCCCCGUCGCCUAGCAACGAc -3'
miRNA:   3'- -GCCGCAGGGGGCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 94905 1.08 0.001726
Target:  5'- gCGGCGUCCCCCGUCGCCUAGCAACGAc -3'
miRNA:   3'- -GCCGCAGGGGGCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 7258 1.08 0.001726
Target:  5'- gCGGCGUCCCCCGUCGCCUAGCAACGAc -3'
miRNA:   3'- -GCCGCAGGGGGCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 132766 1.08 0.001726
Target:  5'- gCGGCGUCCCCCGUCGCCUAGCAACGAc -3'
miRNA:   3'- -GCCGCAGGGGGCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 23669 1.01 0.005038
Target:  5'- gCGGCGUCCCCgGUCGCCUAGCAACGAc -3'
miRNA:   3'- -GCCGCAGGGGgCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 149177 1.01 0.005038
Target:  5'- gCGGCGUCCCCgGUCGCCUAGCAACGAc -3'
miRNA:   3'- -GCCGCAGGGGgCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 130417 0.81 0.127217
Target:  5'- uGGCGgacuacgcgccgCCCCCGUCGCCcGGCGACGc -3'
miRNA:   3'- gCCGCa-----------GGGGGCAGCGGaUCGUUGCu -5'
21444 5' -59.9 NC_004812.1 + 147919 0.78 0.180565
Target:  5'- gGGCGUCCCgCCGUCGCaggAGCGguugGCGGu -3'
miRNA:   3'- gCCGCAGGG-GGCAGCGga-UCGU----UGCU- -5'
21444 5' -59.9 NC_004812.1 + 83544 0.78 0.193658
Target:  5'- gGGCG-CCCCCGUCGucguggcCCUGcGCAGCGAc -3'
miRNA:   3'- gCCGCaGGGGGCAGC-------GGAU-CGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 61517 0.78 0.194124
Target:  5'- gGGCGgaccgCCCUcggggguuguCGUUGCCUAGCAACGAc -3'
miRNA:   3'- gCCGCa----GGGG----------GCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 84830 0.77 0.223926
Target:  5'- uCGGCGaCCCCCGccccccCGCCUGucGCAGCGAc -3'
miRNA:   3'- -GCCGCaGGGGGCa-----GCGGAU--CGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 81480 0.77 0.229256
Target:  5'- aCGGCGUacacgcgcCCCCCGUCGCuCUcgaAGCGACa- -3'
miRNA:   3'- -GCCGCA--------GGGGGCAGCG-GA---UCGUUGcu -5'
21444 5' -59.9 NC_004812.1 + 125772 0.76 0.263512
Target:  5'- gGGCGcgCCCCCGggcggCGCCUGGCGcCGc -3'
miRNA:   3'- gCCGCa-GGGGGCa----GCGGAUCGUuGCu -5'
21444 5' -59.9 NC_004812.1 + 40220 0.75 0.282147
Target:  5'- uCGGCGaCCgCCCG-CGCCUggccGGCGGCGAc -3'
miRNA:   3'- -GCCGCaGG-GGGCaGCGGA----UCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 94702 0.75 0.308596
Target:  5'- gGGCGaggUCUUgGUUGCCUAGCAACGAc -3'
miRNA:   3'- gCCGCa--GGGGgCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 53873 0.74 0.315497
Target:  5'- uCGGCGUgggCCCCGUCGCgUAGCcguagaacGGCGAc -3'
miRNA:   3'- -GCCGCAg--GGGGCAGCGgAUCG--------UUGCU- -5'
21444 5' -59.9 NC_004812.1 + 124264 0.74 0.322514
Target:  5'- gCGGCGgcgCCCCCGUCuCCggagAGCuAGCGGc -3'
miRNA:   3'- -GCCGCa--GGGGGCAGcGGa---UCG-UUGCU- -5'
21444 5' -59.9 NC_004812.1 + 52306 0.74 0.322514
Target:  5'- aGGCGccgUCCCcgCCGUCGCCcgccGGCGACGGc -3'
miRNA:   3'- gCCGC---AGGG--GGCAGCGGa---UCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 143555 0.74 0.336896
Target:  5'- aGGCGg-CCCUGgcgCGCCUGGgCGACGAg -3'
miRNA:   3'- gCCGCagGGGGCa--GCGGAUC-GUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.