miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21444 5' -59.9 NC_004812.1 + 604 0.73 0.359333
Target:  5'- gGGCGuccccUCCCCCG-CGCCgcgAGCAcGCGGg -3'
miRNA:   3'- gCCGC-----AGGGGGCaGCGGa--UCGU-UGCU- -5'
21444 5' -59.9 NC_004812.1 + 1939 0.66 0.774297
Target:  5'- gGGCGcUCCgCCCGUCGg--GGgGACGGg -3'
miRNA:   3'- gCCGC-AGG-GGGCAGCggaUCgUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 2188 0.68 0.660032
Target:  5'- gCGGCGU-CgUCGUCGUCggcgAGCAGCGu -3'
miRNA:   3'- -GCCGCAgGgGGCAGCGGa---UCGUUGCu -5'
21444 5' -59.9 NC_004812.1 + 2752 0.66 0.783247
Target:  5'- gCGGCGggCCagcggaCGUCGCaCUGcGCGGCGGg -3'
miRNA:   3'- -GCCGCagGGg-----GCAGCG-GAU-CGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 3112 0.7 0.552132
Target:  5'- aGGCG-CCgCCGagcuccUCGCCgGGCAGCGGc -3'
miRNA:   3'- gCCGCaGGgGGC------AGCGGaUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 3807 0.67 0.699134
Target:  5'- aCGGCGg-CCUCGgCGCCgccGGCGACGc -3'
miRNA:   3'- -GCCGCagGGGGCaGCGGa--UCGUUGCu -5'
21444 5' -59.9 NC_004812.1 + 3968 0.66 0.765229
Target:  5'- cCGGCGcCCCCC--CGCCgcGCGcCGGc -3'
miRNA:   3'- -GCCGCaGGGGGcaGCGGauCGUuGCU- -5'
21444 5' -59.9 NC_004812.1 + 4124 0.7 0.551168
Target:  5'- cCGGCGgggCCCUCGUCggagagggcggccGCCaGGCGGCGc -3'
miRNA:   3'- -GCCGCa--GGGGGCAG-------------CGGaUCGUUGCu -5'
21444 5' -59.9 NC_004812.1 + 4200 0.67 0.718402
Target:  5'- gGGCG-CCCCCGcggCGCCcGGCcccACGc -3'
miRNA:   3'- gCCGCaGGGGGCa--GCGGaUCGu--UGCu -5'
21444 5' -59.9 NC_004812.1 + 4271 0.67 0.718402
Target:  5'- gCGGCGUUCUCgCG-CGCC-AGCAGgGGc -3'
miRNA:   3'- -GCCGCAGGGG-GCaGCGGaUCGUUgCU- -5'
21444 5' -59.9 NC_004812.1 + 4685 0.67 0.687468
Target:  5'- cCGGCGccgaggggagcgCCCCCGgccCGCCgcGCGAgGAc -3'
miRNA:   3'- -GCCGCa-----------GGGGGCa--GCGGauCGUUgCU- -5'
21444 5' -59.9 NC_004812.1 + 4788 0.69 0.581283
Target:  5'- uGGCGUa-CCCGUCGC--GGUAGCGGg -3'
miRNA:   3'- gCCGCAggGGGCAGCGgaUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 5605 0.66 0.792072
Target:  5'- gCGGgGUCCCCCaGgggGCCggaGGCGGCu- -3'
miRNA:   3'- -GCCgCAGGGGG-Cag-CGGa--UCGUUGcu -5'
21444 5' -59.9 NC_004812.1 + 7055 1.08 0.001726
Target:  5'- gCGGCGUCCCCCGUCGCCUAGCAACGAc -3'
miRNA:   3'- -GCCGCAGGGGGCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 7258 1.08 0.001726
Target:  5'- gCGGCGUCCCCCGUCGCCUAGCAACGAc -3'
miRNA:   3'- -GCCGCAGGGGGCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 8249 0.68 0.650186
Target:  5'- cCGGgGguccgCCCCCGggggCGCCgggGGCcggccGACGAa -3'
miRNA:   3'- -GCCgCa----GGGGGCa---GCGGa--UCG-----UUGCU- -5'
21444 5' -59.9 NC_004812.1 + 8596 0.66 0.783247
Target:  5'- uGGCGcgCCgCCCGgaggccgCGCCUcccGGUAAUGGa -3'
miRNA:   3'- gCCGCa-GG-GGGCa------GCGGA---UCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 11835 0.68 0.644271
Target:  5'- aCGGUGUCCCCgggagcaaacaggauCGcCGUCUGGguGCGc -3'
miRNA:   3'- -GCCGCAGGGG---------------GCaGCGGAUCguUGCu -5'
21444 5' -59.9 NC_004812.1 + 12903 0.66 0.765229
Target:  5'- uCGGUG-CCCCCGggGCggcGCGGCGAg -3'
miRNA:   3'- -GCCGCaGGGGGCagCGgauCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 13045 0.7 0.552132
Target:  5'- gGGCcggCCCCgGUCGCCcccAGCGACa- -3'
miRNA:   3'- gCCGca-GGGGgCAGCGGa--UCGUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.