miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21444 5' -59.9 NC_004812.1 + 143098 0.7 0.523438
Target:  5'- cCGGcCGUCacgccgugggCCCCG-CGCCUGGCGcugACGGa -3'
miRNA:   3'- -GCC-GCAG----------GGGGCaGCGGAUCGU---UGCU- -5'
21444 5' -59.9 NC_004812.1 + 112792 0.73 0.380401
Target:  5'- gCGGCGgcUCCCCCGUCgggcgugugggcgcGCCUcggaaGGCGGCGu -3'
miRNA:   3'- -GCCGC--AGGGGGCAG--------------CGGA-----UCGUUGCu -5'
21444 5' -59.9 NC_004812.1 + 102766 0.73 0.382793
Target:  5'- gCGGCGUcgucgagccCCCCCGcguggucucgUCGCCgAGCAACGu -3'
miRNA:   3'- -GCCGCA---------GGGGGC----------AGCGGaUCGUUGCu -5'
21444 5' -59.9 NC_004812.1 + 117971 0.72 0.415617
Target:  5'- aGGCGggcgCCCCCGgccUCGCCcGGC-GCGGa -3'
miRNA:   3'- gCCGCa---GGGGGC---AGCGGaUCGuUGCU- -5'
21444 5' -59.9 NC_004812.1 + 145027 0.71 0.476984
Target:  5'- gCGGCGUcccuccCCCCCGgUGCCccAGCGACGc -3'
miRNA:   3'- -GCCGCA------GGGGGCaGCGGa-UCGUUGCu -5'
21444 5' -59.9 NC_004812.1 + 121028 0.71 0.486118
Target:  5'- gGGCGcUCCCCuCGgCGCCggcgcGCGACGGc -3'
miRNA:   3'- gCCGC-AGGGG-GCaGCGGau---CGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 49254 0.71 0.486118
Target:  5'- gGGCGUCCggggccgacUCCGgCGCCgucaagAGCGGCGAc -3'
miRNA:   3'- gCCGCAGG---------GGGCaGCGGa-----UCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 56260 0.71 0.495335
Target:  5'- gGGCGcgCCCCUG-CGCCUcgcccGCGGCGGc -3'
miRNA:   3'- gCCGCa-GGGGGCaGCGGAu----CGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 72583 0.7 0.523438
Target:  5'- cCGGCG-CCCCCGgaaaCGUCUcgugcAGCAgGCGAg -3'
miRNA:   3'- -GCCGCaGGGGGCa---GCGGA-----UCGU-UGCU- -5'
21444 5' -59.9 NC_004812.1 + 126112 0.73 0.359333
Target:  5'- gGGCGuccccUCCCCCG-CGCCgcgAGCAcGCGGg -3'
miRNA:   3'- gCCGC-----AGGGGGCaGCGGa--UCGU-UGCU- -5'
21444 5' -59.9 NC_004812.1 + 103785 0.74 0.34426
Target:  5'- uGGcCGUCCCCCaggccaccacGUCGCUgGGCAGCGu -3'
miRNA:   3'- gCC-GCAGGGGG----------CAGCGGaUCGUUGCu -5'
21444 5' -59.9 NC_004812.1 + 143555 0.74 0.336896
Target:  5'- aGGCGg-CCCUGgcgCGCCUGGgCGACGAg -3'
miRNA:   3'- gCCGCagGGGGCa--GCGGAUC-GUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 132766 1.08 0.001726
Target:  5'- gCGGCGUCCCCCGUCGCCUAGCAACGAc -3'
miRNA:   3'- -GCCGCAGGGGGCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 149177 1.01 0.005038
Target:  5'- gCGGCGUCCCCgGUCGCCUAGCAACGAc -3'
miRNA:   3'- -GCCGCAGGGGgCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 147919 0.78 0.180565
Target:  5'- gGGCGUCCCgCCGUCGCaggAGCGguugGCGGu -3'
miRNA:   3'- gCCGCAGGG-GGCAGCGga-UCGU----UGCU- -5'
21444 5' -59.9 NC_004812.1 + 61517 0.78 0.194124
Target:  5'- gGGCGgaccgCCCUcggggguuguCGUUGCCUAGCAACGAc -3'
miRNA:   3'- gCCGCa----GGGG----------GCAGCGGAUCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 81480 0.77 0.229256
Target:  5'- aCGGCGUacacgcgcCCCCCGUCGCuCUcgaAGCGACa- -3'
miRNA:   3'- -GCCGCA--------GGGGGCAGCG-GA---UCGUUGcu -5'
21444 5' -59.9 NC_004812.1 + 40220 0.75 0.282147
Target:  5'- uCGGCGaCCgCCCG-CGCCUggccGGCGGCGAc -3'
miRNA:   3'- -GCCGCaGG-GGGCaGCGGA----UCGUUGCU- -5'
21444 5' -59.9 NC_004812.1 + 53873 0.74 0.315497
Target:  5'- uCGGCGUgggCCCCGUCGCgUAGCcguagaacGGCGAc -3'
miRNA:   3'- -GCCGCAg--GGGGCAGCGgAUCG--------UUGCU- -5'
21444 5' -59.9 NC_004812.1 + 52306 0.74 0.322514
Target:  5'- aGGCGccgUCCCcgCCGUCGCCcgccGGCGACGGc -3'
miRNA:   3'- gCCGC---AGGG--GGCAGCGGa---UCGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.