miRNA display CGI


Results 1 - 20 of 908 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21446 5' -58 NC_004812.1 + 75973 0.66 0.830233
Target:  5'- gGCCa-GCGCcUGCA-GGCGGCGCaGCu -3'
miRNA:   3'- aCGGcaUGUGcACGUgCCGCUGCG-CG- -5'
21446 5' -58 NC_004812.1 + 137166 0.66 0.83753
Target:  5'- gGUgGUACGCGagcuccgUGCACgaGGCGAgGCuGCu -3'
miRNA:   3'- aCGgCAUGUGC-------ACGUG--CCGCUgCG-CG- -5'
21446 5' -58 NC_004812.1 + 154979 0.66 0.83753
Target:  5'- gGCCGcGCgggacccGCGcGCACGGUcccuCGCGCg -3'
miRNA:   3'- aCGGCaUG-------UGCaCGUGCCGcu--GCGCG- -5'
21446 5' -58 NC_004812.1 + 22738 0.66 0.838332
Target:  5'- aGcCCGU-CuCGcGCGCGGCGugGUGg -3'
miRNA:   3'- aC-GGCAuGuGCaCGUGCCGCugCGCg -5'
21446 5' -58 NC_004812.1 + 18324 0.66 0.838332
Target:  5'- cGCCGcgaccacCGCccGCAgGGCGcgGCGCGCg -3'
miRNA:   3'- aCGGCau-----GUGcaCGUgCCGC--UGCGCG- -5'
21446 5' -58 NC_004812.1 + 110264 0.66 0.830233
Target:  5'- cGCgGUGCACGUGCGCcaagaagaucGGCcuGAgggUGUGCc -3'
miRNA:   3'- aCGgCAUGUGCACGUG----------CCG--CU---GCGCG- -5'
21446 5' -58 NC_004812.1 + 137221 0.66 0.830233
Target:  5'- cGCCGUccuggcccugcuGgACGUccGCGCGGUGgGCGgGCu -3'
miRNA:   3'- aCGGCA------------UgUGCA--CGUGCCGC-UGCgCG- -5'
21446 5' -58 NC_004812.1 + 25460 0.66 0.83753
Target:  5'- aGCCGUgguggucGCGCGgGCACacgaGGauguccagaGACGCGCc -3'
miRNA:   3'- aCGGCA-------UGUGCaCGUG----CCg--------CUGCGCG- -5'
21446 5' -58 NC_004812.1 + 144998 0.66 0.830233
Target:  5'- gGCCGUGCGCc-GCuACGGacccugcuCGCGCg -3'
miRNA:   3'- aCGGCAUGUGcaCG-UGCCgcu-----GCGCG- -5'
21446 5' -58 NC_004812.1 + 130972 0.66 0.868874
Target:  5'- gGCCGcccGCGCGcUGCuguuccgcuacuGCGuGgGGCGCGCc -3'
miRNA:   3'- aCGGCa--UGUGC-ACG------------UGC-CgCUGCGCG- -5'
21446 5' -58 NC_004812.1 + 141403 0.66 0.838332
Target:  5'- cGCCGUGCugGaGCGCGccuGCcGCaGCGUc -3'
miRNA:   3'- aCGGCAUGugCaCGUGC---CGcUG-CGCG- -5'
21446 5' -58 NC_004812.1 + 18089 0.66 0.830233
Target:  5'- cGCCGUccgggccgccGCACa--CGCGGaCGACGCGg -3'
miRNA:   3'- aCGGCA----------UGUGcacGUGCC-GCUGCGCg -5'
21446 5' -58 NC_004812.1 + 72954 0.66 0.830233
Target:  5'- cGUCGgacgACACGaccucucGCAgGGCGGCGUcgGCg -3'
miRNA:   3'- aCGGCa---UGUGCa------CGUgCCGCUGCG--CG- -5'
21446 5' -58 NC_004812.1 + 98728 0.66 0.838332
Target:  5'- gGUCGUucucGCGCGgggGCagcgcccccgGCGGCGACgacaggagGCGCa -3'
miRNA:   3'- aCGGCA----UGUGCa--CG----------UGCCGCUG--------CGCG- -5'
21446 5' -58 NC_004812.1 + 79202 0.66 0.830233
Target:  5'- gGCgGggucCACGUcGgGCGGCGGCGCu- -3'
miRNA:   3'- aCGgCau--GUGCA-CgUGCCGCUGCGcg -5'
21446 5' -58 NC_004812.1 + 18585 0.66 0.838332
Target:  5'- cGCCGccGCACccGCGcCGGCGGCGUc- -3'
miRNA:   3'- aCGGCa-UGUGcaCGU-GCCGCUGCGcg -5'
21446 5' -58 NC_004812.1 + 121722 0.66 0.838332
Target:  5'- gGCgaGaGCAgGUGCcCGGgcCGGCGCGCg -3'
miRNA:   3'- aCGg-CaUGUgCACGuGCC--GCUGCGCG- -5'
21446 5' -58 NC_004812.1 + 128918 0.66 0.838332
Target:  5'- cGCCGgcgugugGCugG-GCccCGGCGGCaCGCg -3'
miRNA:   3'- aCGGCa------UGugCaCGu-GCCGCUGcGCG- -5'
21446 5' -58 NC_004812.1 + 85728 0.66 0.838332
Target:  5'- gGCC--GCACGUGCGCcuacGCGGCcuuCGCg -3'
miRNA:   3'- aCGGcaUGUGCACGUGc---CGCUGc--GCG- -5'
21446 5' -58 NC_004812.1 + 154189 0.66 0.830233
Target:  5'- cGCC-UGCGCGcGCugGGgGcuggcCGCGCc -3'
miRNA:   3'- aCGGcAUGUGCaCGugCCgCu----GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.