miRNA display CGI

Results 1 - 20 of 908 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21446	5'	-58	NC_004812.1	+	93928	1.1	0.001726
	Target:  5'- gUGCCGUACACGUGCACGGCGACGCGCc -3' miRNA:   3'- -ACGGCAUGUGCACGUGCCGCUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	62686	0.95	0.018726
	Target:  5'- cGCCGUGCACGUGUACGGC-ACGCGCc -3' miRNA:   3'- aCGGCAUGUGCACGUGCCGcUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	19682	0.86	0.072866
	Target:  5'- cUGCgCGUuCACGUccaGCGCGGCGGCGCGCg -3' miRNA:   3'- -ACG-GCAuGUGCA---CGUGCCGCUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	83462	0.86	0.076779
	Target:  5'- aGCgCGUGCugGUcCGCGGCGGCGCGCc -3' miRNA:   3'- aCG-GCAUGugCAcGUGCCGCUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	30951	0.84	0.10214
	Target:  5'- gGCCGcggGCGCGgcgGCGCGGCGccACGCGCg -3' miRNA:   3'- aCGGCa--UGUGCa--CGUGCCGC--UGCGCG- -5'
21446	5'	-58	NC_004812.1	+	102594	0.84	0.10214
	Target:  5'- gGCUGgagGCACGUGCGCGuaCGACGCGCg -3' miRNA:   3'- aCGGCa--UGUGCACGUGCc-GCUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	50	0.84	0.10214
	Target:  5'- gGCCGcggGCGCGgcgGCGCGGCGccACGCGCg -3' miRNA:   3'- aCGGCa--UGUGCa--CGUGCCGC--UGCGCG- -5'
21446	5'	-58	NC_004812.1	+	156460	0.84	0.10214
	Target:  5'- gGCCGcggGCGCGgcgGCGCGGCGccACGCGCg -3' miRNA:   3'- aCGGCa--UGUGCa--CGUGCCGC--UGCGCG- -5'
21446	5'	-58	NC_004812.1	+	14363	0.83	0.119121
	Target:  5'- uUGCCGgccGCGCGgGCGCGGCGGCGCa- -3' miRNA:   3'- -ACGGCa--UGUGCaCGUGCCGCUGCGcg -5'
21446	5'	-58	NC_004812.1	+	56800	0.82	0.135243
	Target:  5'- cGCCGUucGCGCG-GCGCagcuGGCGGCGCGCc -3' miRNA:   3'- aCGGCA--UGUGCaCGUG----CCGCUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	129402	0.81	0.161193
	Target:  5'- aGCCagagGCGCGgGCGCGGCGGCGCGg -3' miRNA:   3'- aCGGca--UGUGCaCGUGCCGCUGCGCg -5'
21446	5'	-58	NC_004812.1	+	3894	0.81	0.161193
	Target:  5'- aGCCagagGCGCGgGCGCGGCGGCGCGg -3' miRNA:   3'- aCGGca--UGUGCaCGUGCCGCUGCGCg -5'
21446	5'	-58	NC_004812.1	+	112734	0.81	0.165248
	Target:  5'- gGCCGgGCGCGaaccGCGCGGCGGCGcCGCc -3' miRNA:   3'- aCGGCaUGUGCa---CGUGCCGCUGC-GCG- -5'
21446	5'	-58	NC_004812.1	+	100625	0.81	0.165248
	Target:  5'- cGCCGgccaggauCGCGcGCACGGCGGCGCGa -3' miRNA:   3'- aCGGCau------GUGCaCGUGCCGCUGCGCg -5'
21446	5'	-58	NC_004812.1	+	136780	0.81	0.173632
	Target:  5'- cGCUGUACGCGUGCGCgcuGGUGGCccuggaGCGCg -3' miRNA:   3'- aCGGCAUGUGCACGUG---CCGCUG------CGCG- -5'
21446	5'	-58	NC_004812.1	+	94022	0.8	0.181947
	Target:  5'- gGCCGUGgGCGUGCcCGGCGugugccccgugcuGCGCGUg -3' miRNA:   3'- aCGGCAUgUGCACGuGCCGC-------------UGCGCG- -5'
21446	5'	-58	NC_004812.1	+	77041	0.8	0.182394
	Target:  5'- aUGgCGcGCACGcGCGCGGCGAgGCGCu -3' miRNA:   3'- -ACgGCaUGUGCaCGUGCCGCUgCGCG- -5'
21446	5'	-58	NC_004812.1	+	3928	0.8	0.18692
	Target:  5'- gGCCGcGCgGCGgcgGCACGGCG-CGCGCg -3' miRNA:   3'- aCGGCaUG-UGCa--CGUGCCGCuGCGCG- -5'
21446	5'	-58	NC_004812.1	+	60396	0.8	0.18692
	Target:  5'- aGCCGuUGCGC-UGCGCGuCGACGCGCg -3' miRNA:   3'- aCGGC-AUGUGcACGUGCcGCUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	129436	0.8	0.18692
	Target:  5'- gGCCGcGCgGCGgcgGCACGGCG-CGCGCg -3' miRNA:   3'- aCGGCaUG-UGCa--CGUGCCGCuGCGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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