miRNA display CGI

Results 1 - 20 of 908 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21446	5'	-58	NC_004812.1	+	74899	0.77	0.273649
	Target:  5'- cGCCGaGCGCGUccaggcGCGCGuGCaGGCGCGCg -3' miRNA:   3'- aCGGCaUGUGCA------CGUGC-CG-CUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	128225	0.79	0.221443
	Target:  5'- gGCCGgaggccaGCACG-GCGCGGCGcaggucGCGCGCg -3' miRNA:   3'- aCGGCa------UGUGCaCGUGCCGC------UGCGCG- -5'
21446	5'	-58	NC_004812.1	+	23785	0.79	0.226797
	Target:  5'- gGCCauccgACGCGUGCGCGGCuccauGCGCGCc -3' miRNA:   3'- aCGGca---UGUGCACGUGCCGc----UGCGCG- -5'
21446	5'	-58	NC_004812.1	+	144725	0.78	0.231158
	Target:  5'- gGUCGcGCACGUGCGCGGCGucacgguuucccUGCGCa -3' miRNA:   3'- aCGGCaUGUGCACGUGCCGCu-----------GCGCG- -5'
21446	5'	-58	NC_004812.1	+	55639	0.78	0.249315
	Target:  5'- cGCCGgcgcuCGCGgacgucCGCGGCGGCGCGCc -3' miRNA:   3'- aCGGCau---GUGCac----GUGCCGCUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	44953	0.78	0.255226
	Target:  5'- aGCgGUACACGaGCGCcgaGGgGGCGCGCa -3' miRNA:   3'- aCGgCAUGUGCaCGUG---CCgCUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	152658	0.78	0.261251
	Target:  5'- cGCCGUGCcCGgGCugGCGGCcGCGCGCg -3' miRNA:   3'- aCGGCAUGuGCaCG--UGCCGcUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	78471	0.78	0.261251
	Target:  5'- aUGCCGgcCuCGUGCGCcGCGAgGCGCg -3' miRNA:   3'- -ACGGCauGuGCACGUGcCGCUgCGCG- -5'
21446	5'	-58	NC_004812.1	+	130375	0.77	0.265537
	Target:  5'- gGCCGUgaagcgGCcCGUGgcgucgcgcccggcCACGGCGGCGCGCg -3' miRNA:   3'- aCGGCA------UGuGCAC--------------GUGCCGCUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	156141	0.8	0.19627
	Target:  5'- gGCCGcgcggACGCGggGCGCGG-GACGCGCg -3' miRNA:   3'- aCGGCa----UGUGCa-CGUGCCgCUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	128033	0.8	0.191545
	Target:  5'- gGCCGUcgagcgcgggcaGCACG-GCGCGGCGGuacuCGCGCg -3' miRNA:   3'- aCGGCA------------UGUGCaCGUGCCGCU----GCGCG- -5'
21446	5'	-58	NC_004812.1	+	129436	0.8	0.18692
	Target:  5'- gGCCGcGCgGCGgcgGCACGGCG-CGCGCg -3' miRNA:   3'- aCGGCaUG-UGCa--CGUGCCGCuGCGCG- -5'
21446	5'	-58	NC_004812.1	+	19682	0.86	0.072866
	Target:  5'- cUGCgCGUuCACGUccaGCGCGGCGGCGCGCg -3' miRNA:   3'- -ACG-GCAuGUGCA---CGUGCCGCUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	102594	0.84	0.10214
	Target:  5'- gGCUGgagGCACGUGCGCGuaCGACGCGCg -3' miRNA:   3'- aCGGCa--UGUGCACGUGCc-GCUGCGCG- -5'
21446	5'	-58	NC_004812.1	+	50	0.84	0.10214
	Target:  5'- gGCCGcggGCGCGgcgGCGCGGCGccACGCGCg -3' miRNA:   3'- aCGGCa--UGUGCa--CGUGCCGC--UGCGCG- -5'
21446	5'	-58	NC_004812.1	+	156460	0.84	0.10214
	Target:  5'- gGCCGcggGCGCGgcgGCGCGGCGccACGCGCg -3' miRNA:   3'- aCGGCa--UGUGCa--CGUGCCGC--UGCGCG- -5'
21446	5'	-58	NC_004812.1	+	129402	0.81	0.161193
	Target:  5'- aGCCagagGCGCGgGCGCGGCGGCGCGg -3' miRNA:   3'- aCGGca--UGUGCaCGUGCCGCUGCGCg -5'
21446	5'	-58	NC_004812.1	+	100625	0.81	0.165248
	Target:  5'- cGCCGgccaggauCGCGcGCACGGCGGCGCGa -3' miRNA:   3'- aCGGCau------GUGCaCGUGCCGCUGCGCg -5'
21446	5'	-58	NC_004812.1	+	112734	0.81	0.165248
	Target:  5'- gGCCGgGCGCGaaccGCGCGGCGGCGcCGCc -3' miRNA:   3'- aCGGCaUGUGCa---CGUGCCGCUGC-GCG- -5'
21446	5'	-58	NC_004812.1	+	77041	0.8	0.182394
	Target:  5'- aUGgCGcGCACGcGCGCGGCGAgGCGCu -3' miRNA:   3'- -ACgGCaUGUGCaCGUGCCGCUgCGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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