miRNA display CGI


Results 1 - 20 of 908 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21446 5' -58 NC_004812.1 + 50 0.84 0.10214
Target:  5'- gGCCGcggGCGCGgcgGCGCGGCGccACGCGCg -3'
miRNA:   3'- aCGGCa--UGUGCa--CGUGCCGC--UGCGCG- -5'
21446 5' -58 NC_004812.1 + 132 0.73 0.46793
Target:  5'- cGCgaGUGCGCGcGCGUGGCGcCGCGCc -3'
miRNA:   3'- aCGg-CAUGUGCaCGUGCCGCuGCGCG- -5'
21446 5' -58 NC_004812.1 + 376 0.67 0.804063
Target:  5'- cGCCGccgGCGCauccCGCGGCGccccgccccccacGCGCGCa -3'
miRNA:   3'- aCGGCa--UGUGcac-GUGCCGC-------------UGCGCG- -5'
21446 5' -58 NC_004812.1 + 419 0.67 0.804931
Target:  5'- gGCCuu-C-CGcGCGCGGCGcucucGCGCGCg -3'
miRNA:   3'- aCGGcauGuGCaCGUGCCGC-----UGCGCG- -5'
21446 5' -58 NC_004812.1 + 464 0.67 0.821961
Target:  5'- gGCCGccgGCGCGccUGCGuGCGcACGCGCc -3'
miRNA:   3'- aCGGCa--UGUGCacGUGC-CGC-UGCGCG- -5'
21446 5' -58 NC_004812.1 + 523 0.67 0.802323
Target:  5'- cGCUGUcucccgccccgggaGC-CGgaagGCGGCGACGCGCc -3'
miRNA:   3'- aCGGCA--------------UGuGCacg-UGCCGCUGCGCG- -5'
21446 5' -58 NC_004812.1 + 725 0.66 0.861529
Target:  5'- cGCCG-GCGCGgucGCcggcgggggugGgGGCGGCGCGa -3'
miRNA:   3'- aCGGCaUGUGCa--CG-----------UgCCGCUGCGCg -5'
21446 5' -58 NC_004812.1 + 849 0.68 0.750514
Target:  5'- gGCCccGCGCGUGUccccGCGGCcGcgagccccgcccGCGCGCg -3'
miRNA:   3'- aCGGcaUGUGCACG----UGCCG-C------------UGCGCG- -5'
21446 5' -58 NC_004812.1 + 1134 0.7 0.632784
Target:  5'- aGCCGgcCGCcagGCucccCGGCGGCGCGa -3'
miRNA:   3'- aCGGCauGUGca-CGu---GCCGCUGCGCg -5'
21446 5' -58 NC_004812.1 + 1376 0.72 0.533866
Target:  5'- cGCCGUGCGCGacgGCcCGccccGCGcCGCGCc -3'
miRNA:   3'- aCGGCAUGUGCa--CGuGC----CGCuGCGCG- -5'
21446 5' -58 NC_004812.1 + 1440 0.75 0.350271
Target:  5'- gGCCGgggcCGCGagggccggGCACGGCGGCGaCGCc -3'
miRNA:   3'- aCGGCau--GUGCa-------CGUGCCGCUGC-GCG- -5'
21446 5' -58 NC_004812.1 + 1786 0.75 0.38982
Target:  5'- cGCCGacgggaGCGCGUGCAucgggcccCGGCuGCGCGCc -3'
miRNA:   3'- aCGGCa-----UGUGCACGU--------GCCGcUGCGCG- -5'
21446 5' -58 NC_004812.1 + 2232 0.71 0.573008
Target:  5'- gGCCcagcGCACGcgcgGCGCGGCGGCGgGg -3'
miRNA:   3'- aCGGca--UGUGCa---CGUGCCGCUGCgCg -5'
21446 5' -58 NC_004812.1 + 2270 0.71 0.602803
Target:  5'- cGgCGUccGCGCGcaGCACGaGCGGCGCGg -3'
miRNA:   3'- aCgGCA--UGUGCa-CGUGC-CGCUGCGCg -5'
21446 5' -58 NC_004812.1 + 2300 0.66 0.846252
Target:  5'- cGUCGggguccgGCuCGaGCAgGGCGcGCGCGCa -3'
miRNA:   3'- aCGGCa------UGuGCaCGUgCCGC-UGCGCG- -5'
21446 5' -58 NC_004812.1 + 2360 0.68 0.731489
Target:  5'- cGUCGgGCccgGCGcGCGCGGCGuCGCGg -3'
miRNA:   3'- aCGGCaUG---UGCaCGUGCCGCuGCGCg -5'
21446 5' -58 NC_004812.1 + 2407 0.69 0.712135
Target:  5'- gGCCGca-GCG-GCGCGGCcagcccccaGCGCGCg -3'
miRNA:   3'- aCGGCaugUGCaCGUGCCGc--------UGCGCG- -5'
21446 5' -58 NC_004812.1 + 2525 0.8 0.191545
Target:  5'- gGCCGUcgagcgcgggcaGCACG-GCGCGGCGGuacuCGCGCg -3'
miRNA:   3'- aCGGCA------------UGUGCaCGUGCCGCU----GCGCG- -5'
21446 5' -58 NC_004812.1 + 2584 0.67 0.813525
Target:  5'- gUGUCGgGCcCGagGCGCGuGCG-CGCGCg -3'
miRNA:   3'- -ACGGCaUGuGCa-CGUGC-CGCuGCGCG- -5'
21446 5' -58 NC_004812.1 + 2617 0.76 0.306696
Target:  5'- cGCaCGUugGCGccgcggcccagGCGCGGCGGCgGCGCg -3'
miRNA:   3'- aCG-GCAugUGCa----------CGUGCCGCUG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.