miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21457 3' -55.9 NC_004812.1 + 39030 0.66 0.908617
Target:  5'- uGGgGGCGGUGGuGAcGAGcacgccgucgacGGGCCGCccGCGg -3'
miRNA:   3'- -CUgCCGCCACC-CU-CUU------------UCUGGUG--UGC- -5'
21457 3' -55.9 NC_004812.1 + 90563 0.66 0.920242
Target:  5'- uAUGGCGG-GGGcGGAGAGGgCAC-CGu -3'
miRNA:   3'- cUGCCGCCaCCC-UCUUUCUgGUGuGC- -5'
21457 3' -55.9 NC_004812.1 + 94674 0.66 0.902455
Target:  5'- cGACGGCGc-GGGAucccGAGcCCGCGCGg -3'
miRNA:   3'- -CUGCCGCcaCCCUcu--UUCuGGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 49754 0.66 0.911017
Target:  5'- cGCGGCGG-GGGcccGGAAacgcacacccacaaaGGGCCcCGCGg -3'
miRNA:   3'- cUGCCGCCaCCC---UCUU---------------UCUGGuGUGC- -5'
21457 3' -55.9 NC_004812.1 + 99402 0.66 0.920242
Target:  5'- uGCGGCGGcUGGGGucGucGGGgCGCAUGa -3'
miRNA:   3'- cUGCCGCC-ACCCU--CuuUCUgGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 124914 0.66 0.914547
Target:  5'- gGGCGGCGGcGGGGGcgGcGGCCcaucuccCGCGg -3'
miRNA:   3'- -CUGCCGCCaCCCUCuuU-CUGGu------GUGC- -5'
21457 3' -55.9 NC_004812.1 + 124660 0.66 0.908617
Target:  5'- cGCGGcCGGgcaGGAG-GAGACCGCGgGg -3'
miRNA:   3'- cUGCC-GCCac-CCUCuUUCUGGUGUgC- -5'
21457 3' -55.9 NC_004812.1 + 125431 0.66 0.925167
Target:  5'- gGACGGCGGc-GGAGcgcgcgcgGGAGACCccccccuccucccGCGCGg -3'
miRNA:   3'- -CUGCCGCCacCCUC--------UUUCUGG-------------UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 6118 0.66 0.902455
Target:  5'- cGACGGCGGcGGGcugccgGGGAAGG-CGgGCGa -3'
miRNA:   3'- -CUGCCGCCaCCC------UCUUUCUgGUgUGC- -5'
21457 3' -55.9 NC_004812.1 + 101916 0.66 0.914547
Target:  5'- cGCGGCGGUcGGGccucGGGGCCccggacGCGCGg -3'
miRNA:   3'- cUGCCGCCA-CCCucu-UUCUGG------UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 152714 0.66 0.930925
Target:  5'- cGGgGGCGGccucGGAGGcgGAGGCCGgGCGc -3'
miRNA:   3'- -CUgCCGCCac--CCUCU--UUCUGGUgUGC- -5'
21457 3' -55.9 NC_004812.1 + 117611 0.66 0.902455
Target:  5'- --gGGcCGG-GGGAgGggGGGCgGCGCGg -3'
miRNA:   3'- cugCC-GCCaCCCU-CuuUCUGgUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 124261 0.66 0.914547
Target:  5'- gGGCGGUcGUGGGGGcGGGGACCGgggcccCGCa -3'
miRNA:   3'- -CUGCCGcCACCCUC-UUUCUGGU------GUGc -5'
21457 3' -55.9 NC_004812.1 + 151543 0.66 0.908617
Target:  5'- cGACGGCGGggccGGGGccGggGGcGCgGCGCc -3'
miRNA:   3'- -CUGCCGCCa---CCCU--CuuUC-UGgUGUGc -5'
21457 3' -55.9 NC_004812.1 + 70887 0.66 0.908617
Target:  5'- gGGgGGCGGggaGGGGGcGGGGAUCucGCGCGg -3'
miRNA:   3'- -CUgCCGCCa--CCCUC-UUUCUGG--UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 78622 0.66 0.908617
Target:  5'- cGGCGGCGG-GGGGcuguucguuGGAAGACgGgGCc -3'
miRNA:   3'- -CUGCCGCCaCCCU---------CUUUCUGgUgUGc -5'
21457 3' -55.9 NC_004812.1 + 152507 0.66 0.908617
Target:  5'- -cCGGCGccgGGGAGGAcggccccgccgGGGCCGCGgGg -3'
miRNA:   3'- cuGCCGCca-CCCUCUU-----------UCUGGUGUgC- -5'
21457 3' -55.9 NC_004812.1 + 146652 0.66 0.908617
Target:  5'- uGugGGUGGggagGGGAGcguuGGACCggaggcaagaGCACa -3'
miRNA:   3'- -CugCCGCCa---CCCUCuu--UCUGG----------UGUGc -5'
21457 3' -55.9 NC_004812.1 + 101176 0.66 0.918559
Target:  5'- aGGCGGCGGccucggguccggucUGcGGGGccAGGGGCCcCGCGg -3'
miRNA:   3'- -CUGCCGCC--------------AC-CCUC--UUUCUGGuGUGC- -5'
21457 3' -55.9 NC_004812.1 + 7503 0.66 0.920799
Target:  5'- gGACGGUGGgccggagcgaaaggaGGGAGggGGGgCggcgauGCGCGg -3'
miRNA:   3'- -CUGCCGCCa--------------CCCUCuuUCUgG------UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.