miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21457 3' -55.9 NC_004812.1 + 147112 0.72 0.597052
Target:  5'- uGGCGGCaGUGGGuGGAguacAGGCCugcGCACGa -3'
miRNA:   3'- -CUGCCGcCACCCuCUU----UCUGG---UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 72460 0.74 0.527151
Target:  5'- gGAUGGCcggugucuGGUGGGAGggGGGCgGCGgCGc -3'
miRNA:   3'- -CUGCCG--------CCACCCUCuuUCUGgUGU-GC- -5'
21457 3' -55.9 NC_004812.1 + 150963 0.74 0.527151
Target:  5'- -cCGGCGGacgcgGGGAGGaaGAGACCAUGCc -3'
miRNA:   3'- cuGCCGCCa----CCCUCU--UUCUGGUGUGc -5'
21457 3' -55.9 NC_004812.1 + 43071 0.73 0.556814
Target:  5'- cGGgGGCGGUGGGGGugcgGGGACgaaCGCACa -3'
miRNA:   3'- -CUgCCGCCACCCUCu---UUCUG---GUGUGc -5'
21457 3' -55.9 NC_004812.1 + 155854 0.73 0.566812
Target:  5'- cGCGGCGccGGGAGGcGAGGCgCGCGCGg -3'
miRNA:   3'- cUGCCGCcaCCCUCU-UUCUG-GUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 48299 0.73 0.586938
Target:  5'- cGCGGCGGUGGccGAGGA-GGCCgACGCc -3'
miRNA:   3'- cUGCCGCCACC--CUCUUuCUGG-UGUGc -5'
21457 3' -55.9 NC_004812.1 + 156116 0.73 0.586938
Target:  5'- -cCGGgGGccGGGAGAAggggugacGGGCCGCGCGg -3'
miRNA:   3'- cuGCCgCCa-CCCUCUU--------UCUGGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 4771 0.72 0.597052
Target:  5'- aGACGggcGCGGUGGGGGAgGGGGCgGgGCGa -3'
miRNA:   3'- -CUGC---CGCCACCCUCU-UUCUGgUgUGC- -5'
21457 3' -55.9 NC_004812.1 + 70922 0.72 0.597052
Target:  5'- gGGCGGgaGGUGGGAucugccgucGggGGACCGCAa- -3'
miRNA:   3'- -CUGCCg-CCACCCU---------CuuUCUGGUGUgc -5'
21457 3' -55.9 NC_004812.1 + 111782 0.74 0.527151
Target:  5'- gGACGGCGGUGGGcugcGAGAuucuGCUGCGCGu -3'
miRNA:   3'- -CUGCCGCCACCCu---CUUUc---UGGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 118327 0.74 0.507706
Target:  5'- aGCGGCGGaGGGGGAAAGAaCGCAg- -3'
miRNA:   3'- cUGCCGCCaCCCUCUUUCUgGUGUgc -5'
21457 3' -55.9 NC_004812.1 + 155719 0.76 0.433358
Target:  5'- gGAgGGgGGUGGGGGGuggGGGGCgCGCGCGg -3'
miRNA:   3'- -CUgCCgCCACCCUCU---UUCUG-GUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 149042 0.8 0.253607
Target:  5'- -cCGGCGGUGGGGGcgGGACCGCcccccGCGc -3'
miRNA:   3'- cuGCCGCCACCCUCuuUCUGGUG-----UGC- -5'
21457 3' -55.9 NC_004812.1 + 122245 0.78 0.334765
Target:  5'- cGGCGGCGGggcgcGGGcGggGGGCCACGgGg -3'
miRNA:   3'- -CUGCCGCCa----CCCuCuuUCUGGUGUgC- -5'
21457 3' -55.9 NC_004812.1 + 149643 0.77 0.350008
Target:  5'- gGGCGGgGGUGGGGGAAGGGgggGCGCGa -3'
miRNA:   3'- -CUGCCgCCACCCUCUUUCUgg-UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 148171 0.77 0.357812
Target:  5'- cGCGGCGGUGGGAGcggaaggguGAGcGGCCuCACGg -3'
miRNA:   3'- cUGCCGCCACCCUC---------UUU-CUGGuGUGC- -5'
21457 3' -55.9 NC_004812.1 + 127556 0.77 0.365737
Target:  5'- cGGCGGCGGggggcgcGGGGGAGGGGgCGCGCc -3'
miRNA:   3'- -CUGCCGCCa------CCCUCUUUCUgGUGUGc -5'
21457 3' -55.9 NC_004812.1 + 126928 0.76 0.407145
Target:  5'- cGACGGCGGccgcgGGGAGGggccGGGGCCGCGa- -3'
miRNA:   3'- -CUGCCGCCa----CCCUCU----UUCUGGUGUgc -5'
21457 3' -55.9 NC_004812.1 + 154950 0.76 0.415773
Target:  5'- cGCGGgGGggGGGGGAGgggggacgggcGGGCCGCGCGg -3'
miRNA:   3'- cUGCCgCCa-CCCUCUU-----------UCUGGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 39776 0.76 0.415773
Target:  5'- aGGCGGCGGUGGGAG----GCCACcuCGa -3'
miRNA:   3'- -CUGCCGCCACCCUCuuucUGGUGu-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.