miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21457 3' -55.9 NC_004812.1 + 86819 0.98 0.018245
Target:  5'- cGGCGacGCGGUGGGAGAAAGACCACACGg -3'
miRNA:   3'- -CUGC--CGCCACCCUCUUUCUGGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 76187 0.82 0.196023
Target:  5'- gGugGGCGGcgGGGAGGGaaagaagggaugggcAGACCGCGCGg -3'
miRNA:   3'- -CugCCGCCa-CCCUCUU---------------UCUGGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 30049 0.8 0.253607
Target:  5'- gGGCGGgGGagGGGGGAGGGGCgCGCGCGg -3'
miRNA:   3'- -CUGCCgCCa-CCCUCUUUCUG-GUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 23534 0.8 0.253607
Target:  5'- -cCGGCGGUGGGGGcgGGACCGCcccccGCGc -3'
miRNA:   3'- cuGCCGCCACCCUCuuUCUGGUG-----UGC- -5'
21457 3' -55.9 NC_004812.1 + 155558 0.8 0.253607
Target:  5'- gGGCGGgGGagGGGGGAGGGGCgCGCGCGg -3'
miRNA:   3'- -CUGCCgCCa-CCCUCUUUCUG-GUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 149042 0.8 0.253607
Target:  5'- -cCGGCGGUGGGGGcgGGACCGCcccccGCGc -3'
miRNA:   3'- cuGCCGCCACCCUCuuUCUGGUG-----UGC- -5'
21457 3' -55.9 NC_004812.1 + 62929 0.79 0.26592
Target:  5'- gGACGGCGGUGGcGAGGgcGA-CACGCGg -3'
miRNA:   3'- -CUGCCGCCACC-CUCUuuCUgGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 153146 0.78 0.334765
Target:  5'- cGGCGGCGGggcgcGGGcGggGGGCCACGgGg -3'
miRNA:   3'- -CUGCCGCCa----CCCuCuuUCUGGUGUgC- -5'
21457 3' -55.9 NC_004812.1 + 122245 0.78 0.334765
Target:  5'- cGGCGGCGGggcgcGGGcGggGGGCCACGgGg -3'
miRNA:   3'- -CUGCCGCCa----CCCuCuuUCUGGUGUgC- -5'
21457 3' -55.9 NC_004812.1 + 24134 0.77 0.350008
Target:  5'- gGGCGGgGGUGGGGGAAGGGgggGCGCGa -3'
miRNA:   3'- -CUGCCgCCACCCUCUUUCUgg-UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 149643 0.77 0.350008
Target:  5'- gGGCGGgGGUGGGGGAAGGGgggGCGCGa -3'
miRNA:   3'- -CUGCCgCCACCCUCUUUCUgg-UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 148171 0.77 0.357812
Target:  5'- cGCGGCGGUGGGAGcggaaggguGAGcGGCCuCACGg -3'
miRNA:   3'- cUGCCGCCACCCUC---------UUU-CUGGuGUGC- -5'
21457 3' -55.9 NC_004812.1 + 2047 0.77 0.365737
Target:  5'- cGGCGGCGGggggcgcGGGGGAGGGGgCGCGCc -3'
miRNA:   3'- -CUGCCGCCa------CCCUCUUUCUgGUGUGc -5'
21457 3' -55.9 NC_004812.1 + 127556 0.77 0.365737
Target:  5'- cGGCGGCGGggggcgcGGGGGAGGGGgCGCGCc -3'
miRNA:   3'- -CUGCCGCCa------CCCUCUUUCUgGUGUGc -5'
21457 3' -55.9 NC_004812.1 + 116135 0.77 0.381948
Target:  5'- cGAUGGCGGUguauuacgGGGAGAcGGGCCGCcCGu -3'
miRNA:   3'- -CUGCCGCCA--------CCCUCUuUCUGGUGuGC- -5'
21457 3' -55.9 NC_004812.1 + 1420 0.76 0.407145
Target:  5'- cGACGGCGGccgcgGGGAGGggccGGGGCCGCGa- -3'
miRNA:   3'- -CUGCCGCCa----CCCUCU----UUCUGGUGUgc -5'
21457 3' -55.9 NC_004812.1 + 126928 0.76 0.407145
Target:  5'- cGACGGCGGccgcgGGGAGGggccGGGGCCGCGa- -3'
miRNA:   3'- -CUGCCGCCa----CCCUCU----UUCUGGUGUgc -5'
21457 3' -55.9 NC_004812.1 + 88224 0.76 0.407145
Target:  5'- gGACGGCGGcUGGGcggcGGggGcguuuGACCGCGCGu -3'
miRNA:   3'- -CUGCCGCC-ACCC----UCuuU-----CUGGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 39776 0.76 0.415773
Target:  5'- aGGCGGCGGUGGGAG----GCCACcuCGa -3'
miRNA:   3'- -CUGCCGCCACCCUCuuucUGGUGu-GC- -5'
21457 3' -55.9 NC_004812.1 + 154950 0.76 0.415773
Target:  5'- cGCGGgGGggGGGGGAGgggggacgggcGGGCCGCGCGg -3'
miRNA:   3'- cUGCCgCCa-CCCUCUU-----------UCUGGUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.