miRNA display CGI


Results 1 - 20 of 257 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21457 3' -55.9 NC_004812.1 + 739 0.68 0.845183
Target:  5'- -cCGGCGG-GGGuGggGG-CgGCGCGa -3'
miRNA:   3'- cuGCCGCCaCCCuCuuUCuGgUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 1420 0.76 0.407145
Target:  5'- cGACGGCGGccgcgGGGAGGggccGGGGCCGCGa- -3'
miRNA:   3'- -CUGCCGCCa----CCCUCU----UUCUGGUGUgc -5'
21457 3' -55.9 NC_004812.1 + 2047 0.77 0.365737
Target:  5'- cGGCGGCGGggggcgcGGGGGAGGGGgCGCGCc -3'
miRNA:   3'- -CUGCCGCCa------CCCUCUUUCUgGUGUGc -5'
21457 3' -55.9 NC_004812.1 + 3094 0.69 0.803011
Target:  5'- aGGCgGGCGGggcGGGGGAGGcGCCGC-CGa -3'
miRNA:   3'- -CUG-CCGCCa--CCCUCUUUcUGGUGuGC- -5'
21457 3' -55.9 NC_004812.1 + 3520 0.69 0.785017
Target:  5'- -cCGGCGGccccGGGGGcgGGGCCGCGgCGc -3'
miRNA:   3'- cuGCCGCCa---CCCUCuuUCUGGUGU-GC- -5'
21457 3' -55.9 NC_004812.1 + 3712 0.69 0.811783
Target:  5'- cGGCGGCGGcgccGGcGGAGcgcaccuggcgcGGGCCGCGCGc -3'
miRNA:   3'- -CUGCCGCCa---CCcUCUU------------UCUGGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 3909 0.72 0.647862
Target:  5'- cGCGGCGGcGcGGcGGcgGGGCCGCGCGg -3'
miRNA:   3'- cUGCCGCCaC-CC-UCuuUCUGGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 4633 0.7 0.73781
Target:  5'- --gGGCGG-GGGGGcgGGAcgcCCGCGCGg -3'
miRNA:   3'- cugCCGCCaCCCUCuuUCU---GGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 4771 0.72 0.597052
Target:  5'- aGACGggcGCGGUGGGGGAgGGGGCgGgGCGa -3'
miRNA:   3'- -CUGC---CGCCACCCUCU-UUCUGgUgUGC- -5'
21457 3' -55.9 NC_004812.1 + 5019 0.67 0.889441
Target:  5'- gGGCGGCaGGUGGGGcGgcAGGCgGgGCa -3'
miRNA:   3'- -CUGCCG-CCACCCU-CuuUCUGgUgUGc -5'
21457 3' -55.9 NC_004812.1 + 5227 0.69 0.766479
Target:  5'- gGGCGGgGGcucccGGGAGAAgcacaAGACCcACACa -3'
miRNA:   3'- -CUGCCgCCa----CCCUCUU-----UCUGG-UGUGc -5'
21457 3' -55.9 NC_004812.1 + 5282 0.68 0.837102
Target:  5'- aGGCGGgGGgaggcccGGGAGGagaagcccGAGACCcACACa -3'
miRNA:   3'- -CUGCCgCCa------CCCUCU--------UUCUGG-UGUGc -5'
21457 3' -55.9 NC_004812.1 + 5682 0.66 0.925702
Target:  5'- cACGGgGGgccGGGGGucucccAGGGCCACGgGg -3'
miRNA:   3'- cUGCCgCCa--CCCUCu-----UUCUGGUGUgC- -5'
21457 3' -55.9 NC_004812.1 + 5716 0.7 0.736839
Target:  5'- gGGCGGgGGUcugccgcGGGAGGAGGgcGCCGgGCGc -3'
miRNA:   3'- -CUGCCgCCA-------CCCUCUUUC--UGGUgUGC- -5'
21457 3' -55.9 NC_004812.1 + 6118 0.66 0.902455
Target:  5'- cGACGGCGGcGGGcugccgGGGAAGG-CGgGCGa -3'
miRNA:   3'- -CUGCCGCCaCCC------UCUUUCUgGUgUGC- -5'
21457 3' -55.9 NC_004812.1 + 6263 0.71 0.708323
Target:  5'- cGCGGuCGG-GGGGGAgcuAGGGCCagggGCACGg -3'
miRNA:   3'- cUGCC-GCCaCCCUCU---UUCUGG----UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 7503 0.66 0.920799
Target:  5'- gGACGGUGGgccggagcgaaaggaGGGAGggGGGgCggcgauGCGCGg -3'
miRNA:   3'- -CUGCCGCCa--------------CCCUCuuUCUgG------UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 8889 0.7 0.72806
Target:  5'- aGGCGGaGGaGGGAuGGAGGAUgGCACGg -3'
miRNA:   3'- -CUGCCgCCaCCCU-CUUUCUGgUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 10156 0.71 0.688331
Target:  5'- aGACGGCGacGGGGGggGGGCguuCGCGa -3'
miRNA:   3'- -CUGCCGCcaCCCUCuuUCUGgu-GUGC- -5'
21457 3' -55.9 NC_004812.1 + 10399 0.71 0.708323
Target:  5'- -cCGGCGG-GGuGAGggGGAUCACGg- -3'
miRNA:   3'- cuGCCGCCaCC-CUCuuUCUGGUGUgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.