miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21457 5' -64.8 NC_004812.1 + 58353 0.66 0.509159
Target:  5'- cAGCGCGCgGGUcccgGCCUCCaGG-GCCGc -3'
miRNA:   3'- -UCGCGUGaCCA----CGGGGGgCCaCGGCc -5'
21457 5' -64.8 NC_004812.1 + 142185 0.66 0.509159
Target:  5'- uGGCGCGCUGGccggcgcggggcUGgCCgCCGGcgucgucgUGCUGGc -3'
miRNA:   3'- -UCGCGUGACC------------ACgGGgGGCC--------ACGGCC- -5'
21457 5' -64.8 NC_004812.1 + 140101 0.66 0.553702
Target:  5'- gAGCGCAUcgcccccgcGCCCCCCGGccggUGgCGGa -3'
miRNA:   3'- -UCGCGUGacca-----CGGGGGGCC----ACgGCC- -5'
21457 5' -64.8 NC_004812.1 + 125191 0.66 0.527552
Target:  5'- gGGCGCGC-GG-GCCcgCCCCGGccgcggcgGCCGu -3'
miRNA:   3'- -UCGCGUGaCCaCGG--GGGGCCa-------CGGCc -5'
21457 5' -64.8 NC_004812.1 + 23811 0.66 0.536842
Target:  5'- uGCGCGCcgcgcgGGgcgGCgaCCCGGgGCCGGc -3'
miRNA:   3'- uCGCGUGa-----CCa--CGggGGGCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 110923 0.66 0.527552
Target:  5'- uGCuGCAgCUGGUGCCgUCCCGGggggGCUu- -3'
miRNA:   3'- uCG-CGU-GACCACGG-GGGGCCa---CGGcc -5'
21457 5' -64.8 NC_004812.1 + 71969 0.66 0.509159
Target:  5'- cGCGCGCcgcGGgagGCUcacgcgCCCCGGgGCUGGg -3'
miRNA:   3'- uCGCGUGa--CCa--CGG------GGGGCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 122200 0.66 0.536842
Target:  5'- gGGCGgGCUgucugGGcGCCgCCCCGGgggcggGCgCGGg -3'
miRNA:   3'- -UCGCgUGA-----CCaCGG-GGGGCCa-----CG-GCC- -5'
21457 5' -64.8 NC_004812.1 + 45256 0.66 0.536842
Target:  5'- gGGCGacgaGCUGGgggGCCCgCgGG-GUCGGc -3'
miRNA:   3'- -UCGCg---UGACCa--CGGGgGgCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 8232 0.66 0.500063
Target:  5'- cGCGCccggcggccggGCcgggGGUccGCCCCCgGGggcGCCGGg -3'
miRNA:   3'- uCGCG-----------UGa---CCA--CGGGGGgCCa--CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 145024 0.66 0.546188
Target:  5'- cGCGCgGCgucccucCCCCCCGGUGCCc- -3'
miRNA:   3'- uCGCG-UGaccac--GGGGGGCCACGGcc -5'
21457 5' -64.8 NC_004812.1 + 100317 0.66 0.555585
Target:  5'- cGCGUGCUGGaccagGCCCUCgagCGG-GCCGc -3'
miRNA:   3'- uCGCGUGACCa----CGGGGG---GCCaCGGCc -5'
21457 5' -64.8 NC_004812.1 + 121743 0.66 0.518323
Target:  5'- cGGCGCGCggcgGGgggcgccgGgCCUCCGGgagGCgGGg -3'
miRNA:   3'- -UCGCGUGa---CCa-------CgGGGGGCCa--CGgCC- -5'
21457 5' -64.8 NC_004812.1 + 122376 0.66 0.536842
Target:  5'- cGGgGCGC-GGcgGCCCCUCGG-GCCc- -3'
miRNA:   3'- -UCgCGUGaCCa-CGGGGGGCCaCGGcc -5'
21457 5' -64.8 NC_004812.1 + 77630 0.66 0.546188
Target:  5'- uGGCGCugUaaaccGCCCCCCGGUGgaaguacucCCGc -3'
miRNA:   3'- -UCGCGugAcca--CGGGGGGCCAC---------GGCc -5'
21457 5' -64.8 NC_004812.1 + 15419 0.66 0.527552
Target:  5'- gAGCGCGCcgccccGG-GCCUCCgGGaGCUGGc -3'
miRNA:   3'- -UCGCGUGa-----CCaCGGGGGgCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 80219 0.66 0.546188
Target:  5'- gGGCGaACUGGUuCCuggCCCCGGUGaCCa- -3'
miRNA:   3'- -UCGCgUGACCAcGG---GGGGCCAC-GGcc -5'
21457 5' -64.8 NC_004812.1 + 144246 0.66 0.546188
Target:  5'- cGCGCgGCcGGgcgcGCCCCCCgccaagguGGUGUgGGa -3'
miRNA:   3'- uCGCG-UGaCCa---CGGGGGG--------CCACGgCC- -5'
21457 5' -64.8 NC_004812.1 + 5591 0.66 0.518323
Target:  5'- gGGC-CACgggGGgggcgggGUCCCCCaGGggGCCGGa -3'
miRNA:   3'- -UCGcGUGa--CCa------CGGGGGG-CCa-CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 29317 0.66 0.500063
Target:  5'- cAGCGCGCcaccguuuuccUGGUGCCCCgCCGcca-CGGc -3'
miRNA:   3'- -UCGCGUG-----------ACCACGGGG-GGCcacgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.