miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21457 5' -64.8 NC_004812.1 + 86862 1.09 0.000484
Target:  5'- gAGCGCACUGGUGCCCCCCGGUGCCGGa -3'
miRNA:   3'- -UCGCGUGACCACGGGGGGCCACGGCC- -5'
21457 5' -64.8 NC_004812.1 + 106226 0.78 0.095333
Target:  5'- uGCGCGgUGGUGCacgcgCCCCCGGcGUCGGg -3'
miRNA:   3'- uCGCGUgACCACG-----GGGGGCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 12894 0.77 0.110594
Target:  5'- cAGCgGCGCUcGGUGCCCCCgGGgcgGCgCGGc -3'
miRNA:   3'- -UCG-CGUGA-CCACGGGGGgCCa--CG-GCC- -5'
21457 5' -64.8 NC_004812.1 + 105069 0.76 0.12201
Target:  5'- gGGCGCACacugGCCCCCCGGcGCCGc -3'
miRNA:   3'- -UCGCGUGaccaCGGGGGGCCaCGGCc -5'
21457 5' -64.8 NC_004812.1 + 72856 0.76 0.12201
Target:  5'- gGGCGCGCUGGcGUCCCUggCGGcaGCCGGg -3'
miRNA:   3'- -UCGCGUGACCaCGGGGG--GCCa-CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 65465 0.74 0.167048
Target:  5'- gAGUGCgGCUGGacCCCCCCGG-GCCGa -3'
miRNA:   3'- -UCGCG-UGACCacGGGGGGCCaCGGCc -5'
21457 5' -64.8 NC_004812.1 + 71889 0.74 0.168646
Target:  5'- cGGCGCGCUcGGaGCcgccguccgacgcguCCCCCGGUGCgGGc -3'
miRNA:   3'- -UCGCGUGA-CCaCG---------------GGGGGCCACGgCC- -5'
21457 5' -64.8 NC_004812.1 + 8161 0.74 0.17107
Target:  5'- cGCGCucacCUGGgGCCCCCCauGGguccggGCCGGg -3'
miRNA:   3'- uCGCGu---GACCaCGGGGGG--CCa-----CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 39062 0.74 0.17107
Target:  5'- cGCGCucacCUGGgGCCCCCCauGGguccggGCCGGg -3'
miRNA:   3'- uCGCGu---GACCaCGGGGGG--CCa-----CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 60870 0.74 0.175179
Target:  5'- gGGCGCgcgGCUGG-GCUCCa-GGUGCCGGc -3'
miRNA:   3'- -UCGCG---UGACCaCGGGGggCCACGGCC- -5'
21457 5' -64.8 NC_004812.1 + 125737 0.74 0.175179
Target:  5'- cGCGCGCUGaGccGCCCCCuCGGccccccaugGCCGGg -3'
miRNA:   3'- uCGCGUGAC-Ca-CGGGGG-GCCa--------CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 133964 0.74 0.175179
Target:  5'- cGgGCACgcgGGaGCCCCCgGGUGgCGGg -3'
miRNA:   3'- uCgCGUGa--CCaCGGGGGgCCACgGCC- -5'
21457 5' -64.8 NC_004812.1 + 138737 0.73 0.197063
Target:  5'- cGGCGUGCcggccGGUcGCCCCCgCGGUGCCu- -3'
miRNA:   3'- -UCGCGUGa----CCA-CGGGGG-GCCACGGcc -5'
21457 5' -64.8 NC_004812.1 + 103266 0.72 0.221296
Target:  5'- aGGCGCGCgGGggcgacggccGCCCCCCgcacgcugacGGUGCCGu -3'
miRNA:   3'- -UCGCGUGaCCa---------CGGGGGG----------CCACGGCc -5'
21457 5' -64.8 NC_004812.1 + 124580 0.72 0.221296
Target:  5'- cGCGgGcCUGGaGCCCCCgGGgggcgGCCGGu -3'
miRNA:   3'- uCGCgU-GACCaCGGGGGgCCa----CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 37817 0.72 0.226438
Target:  5'- gGGCGCGCUGc-GCCCgCgGG-GCCGGg -3'
miRNA:   3'- -UCGCGUGACcaCGGGgGgCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 6916 0.72 0.226438
Target:  5'- gGGCGCGCUGc-GCCCgCgGG-GCCGGg -3'
miRNA:   3'- -UCGCGUGACcaCGGGgGgCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 60083 0.72 0.23168
Target:  5'- gAGCGCACgcgGGcGagCCCCgGGUGcCCGGg -3'
miRNA:   3'- -UCGCGUGa--CCaCg-GGGGgCCAC-GGCC- -5'
21457 5' -64.8 NC_004812.1 + 54787 0.72 0.248022
Target:  5'- gGGCG-GCUGGUcggGCCCCCCGGccgcgaGCCuGGg -3'
miRNA:   3'- -UCGCgUGACCA---CGGGGGGCCa-----CGG-CC- -5'
21457 5' -64.8 NC_004812.1 + 126075 0.72 0.253678
Target:  5'- cGCGCcCUGcGccUGCCCCCCGGcGCCu- -3'
miRNA:   3'- uCGCGuGAC-C--ACGGGGGGCCaCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.