miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21457 5' -64.8 NC_004812.1 + 153763 0.7 0.329953
Target:  5'- cGUGgACgccGUGCCCCCCGaGgagugGCCGGc -3'
miRNA:   3'- uCGCgUGac-CACGGGGGGC-Ca----CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 26275 0.71 0.288585
Target:  5'- cGGcCGCGCgGGUGCCCCgCGGcgacaggggaagGUCGGg -3'
miRNA:   3'- -UC-GCGUGaCCACGGGGgGCCa-----------CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 103696 0.7 0.296262
Target:  5'- aGGCGgGCaGGU-CCUCCCGGcgcGCCGGg -3'
miRNA:   3'- -UCGCgUGaCCAcGGGGGGCCa--CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 99171 0.7 0.301468
Target:  5'- gGGCcauGCACugcauggaccccgUGGUGCCgCCCGGcccccgguccaggUGCCGGg -3'
miRNA:   3'- -UCG---CGUG-------------ACCACGGgGGGCC-------------ACGGCC- -5'
21457 5' -64.8 NC_004812.1 + 120727 0.7 0.30278
Target:  5'- cGGCGCACg---GCCCCCCGGcGCgcagagaacaCGGa -3'
miRNA:   3'- -UCGCGUGaccaCGGGGGGCCaCG----------GCC- -5'
21457 5' -64.8 NC_004812.1 + 130557 0.7 0.309408
Target:  5'- gGGCGCGCgagGGcgccGCgCCCCCGGccCCGGc -3'
miRNA:   3'- -UCGCGUGa--CCa---CG-GGGGGCCacGGCC- -5'
21457 5' -64.8 NC_004812.1 + 117566 0.7 0.316146
Target:  5'- gAGCGCGCgggccgaaaUGG-GCCCCCCgaggcuuuucggGGUuccggGCCGGg -3'
miRNA:   3'- -UCGCGUG---------ACCaCGGGGGG------------CCA-----CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 111948 0.7 0.316146
Target:  5'- cGCGCGC-GGcgagucgGCCCCgCCGGgGUCGGa -3'
miRNA:   3'- uCGCGUGaCCa------CGGGG-GGCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 32554 0.7 0.322994
Target:  5'- gGGCGCAgCUGGccgcgGCCCCCCagcacacgcgcaGGgcgGCCGu -3'
miRNA:   3'- -UCGCGU-GACCa----CGGGGGG------------CCa--CGGCc -5'
21457 5' -64.8 NC_004812.1 + 145948 0.71 0.283554
Target:  5'- uGGCGCugcGCUGGgugcgggGCaCCCUCGG-GCUGGg -3'
miRNA:   3'- -UCGCG---UGACCa------CG-GGGGGCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 149097 0.71 0.281065
Target:  5'- cGGCGCGCcgcggggcggggguUGG-GCgCCCCGGUcguccgcgcggccGCCGGg -3'
miRNA:   3'- -UCGCGUG--------------ACCaCGgGGGGCCA-------------CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 29835 0.71 0.271281
Target:  5'- cGCGCAgaGGcGCCaCCCGGUggccugagGCCGGa -3'
miRNA:   3'- uCGCGUgaCCaCGGgGGGCCA--------CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 8161 0.74 0.17107
Target:  5'- cGCGCucacCUGGgGCCCCCCauGGguccggGCCGGg -3'
miRNA:   3'- uCGCGu---GACCaCGGGGGG--CCa-----CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 133964 0.74 0.175179
Target:  5'- cGgGCACgcgGGaGCCCCCgGGUGgCGGg -3'
miRNA:   3'- uCgCGUGa--CCaCGGGGGgCCACgGCC- -5'
21457 5' -64.8 NC_004812.1 + 60870 0.74 0.175179
Target:  5'- gGGCGCgcgGCUGG-GCUCCa-GGUGCCGGc -3'
miRNA:   3'- -UCGCG---UGACCaCGGGGggCCACGGCC- -5'
21457 5' -64.8 NC_004812.1 + 138737 0.73 0.197063
Target:  5'- cGGCGUGCcggccGGUcGCCCCCgCGGUGCCu- -3'
miRNA:   3'- -UCGCGUGa----CCA-CGGGGG-GCCACGGcc -5'
21457 5' -64.8 NC_004812.1 + 103266 0.72 0.221296
Target:  5'- aGGCGCGCgGGggcgacggccGCCCCCCgcacgcugacGGUGCCGu -3'
miRNA:   3'- -UCGCGUGaCCa---------CGGGGGG----------CCACGGCc -5'
21457 5' -64.8 NC_004812.1 + 6916 0.72 0.226438
Target:  5'- gGGCGCGCUGc-GCCCgCgGG-GCCGGg -3'
miRNA:   3'- -UCGCGUGACcaCGGGgGgCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 54787 0.72 0.248022
Target:  5'- gGGCG-GCUGGUcggGCCCCCCGGccgcgaGCCuGGg -3'
miRNA:   3'- -UCGCgUGACCA---CGGGGGGCCa-----CGG-CC- -5'
21457 5' -64.8 NC_004812.1 + 44974 0.71 0.265307
Target:  5'- gGGCGCGCaGGagGCCCgcggccacgagCCaGGUGCCGGa -3'
miRNA:   3'- -UCGCGUGaCCa-CGGG-----------GGgCCACGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.