miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21457 5' -64.8 NC_004812.1 + 105 0.69 0.373997
Target:  5'- gGGCGCGCgcgGGgccgggaGCCCgCCCGGgagcccGcCCGGg -3'
miRNA:   3'- -UCGCGUGa--CCa------CGGG-GGGCCa-----C-GGCC- -5'
21457 5' -64.8 NC_004812.1 + 753 0.69 0.358881
Target:  5'- cGCGCGCgccucGCCUCCCGGcGCCGcGg -3'
miRNA:   3'- uCGCGUGacca-CGGGGGGCCaCGGC-C- -5'
21457 5' -64.8 NC_004812.1 + 1534 0.67 0.459212
Target:  5'- gGGCGCccgcccuCUuuaauuauucaccgcGGUGCUCCCCGGguucCCGGa -3'
miRNA:   3'- -UCGCGu------GA---------------CCACGGGGGGCCac--GGCC- -5'
21457 5' -64.8 NC_004812.1 + 5048 0.7 0.309408
Target:  5'- gGGCGCGCgagGGcgccGCgCCCCCGGccCCGGc -3'
miRNA:   3'- -UCGCGUGa--CCa---CG-GGGGGCCacGGCC- -5'
21457 5' -64.8 NC_004812.1 + 5591 0.66 0.518323
Target:  5'- gGGC-CACgggGGgggcgggGUCCCCCaGGggGCCGGa -3'
miRNA:   3'- -UCGcGUGa--CCa------CGGGGGG-CCa-CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 6421 0.66 0.555585
Target:  5'- cGGCGCGCcGuacaGCCCgCCCGGcggggggaccGCCGGg -3'
miRNA:   3'- -UCGCGUGaCca--CGGG-GGGCCa---------CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 6916 0.72 0.226438
Target:  5'- gGGCGCGCUGc-GCCCgCgGG-GCCGGg -3'
miRNA:   3'- -UCGCGUGACcaCGGGgGgCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 7652 0.66 0.555585
Target:  5'- gGGCGCgaaGCUGcG-GgCCCgCGG-GCCGGg -3'
miRNA:   3'- -UCGCG---UGAC-CaCgGGGgGCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 8027 0.66 0.555585
Target:  5'- gGGCGCgggccggccuccGCcGGcaCCCCCCGGcgcccgGCCGGc -3'
miRNA:   3'- -UCGCG------------UGaCCacGGGGGGCCa-----CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 8161 0.74 0.17107
Target:  5'- cGCGCucacCUGGgGCCCCCCauGGguccggGCCGGg -3'
miRNA:   3'- uCGCGu---GACCaCGGGGGG--CCa-----CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 8232 0.66 0.500063
Target:  5'- cGCGCccggcggccggGCcgggGGUccGCCCCCgGGggcGCCGGg -3'
miRNA:   3'- uCGCG-----------UGa---CCA--CGGGGGgCCa--CGGCC- -5'
21457 5' -64.8 NC_004812.1 + 8911 0.66 0.555585
Target:  5'- --gGCAC-GGUGCCCugCuuGGgGCCGGu -3'
miRNA:   3'- ucgCGUGaCCACGGG--GggCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 10557 0.68 0.413628
Target:  5'- cGCGCGuuCUGcGUGCCggcgagCGGUGCCGGg -3'
miRNA:   3'- uCGCGU--GAC-CACGGggg---GCCACGGCC- -5'
21457 5' -64.8 NC_004812.1 + 12160 0.67 0.464441
Target:  5'- cGGCGCGCcgucgGG-GCCCCagaaCGGcGCgGGa -3'
miRNA:   3'- -UCGCGUGa----CCaCGGGGg---GCCaCGgCC- -5'
21457 5' -64.8 NC_004812.1 + 12894 0.77 0.110594
Target:  5'- cAGCgGCGCUcGGUGCCCCCgGGgcgGCgCGGc -3'
miRNA:   3'- -UCG-CGUGA-CCACGGGGGgCCa--CG-GCC- -5'
21457 5' -64.8 NC_004812.1 + 15182 0.68 0.437767
Target:  5'- uGGCGCGCc---GCCCUCCGGgccucgcUGCUGGa -3'
miRNA:   3'- -UCGCGUGaccaCGGGGGGCC-------ACGGCC- -5'
21457 5' -64.8 NC_004812.1 + 15419 0.66 0.527552
Target:  5'- gAGCGCGCcgccccGG-GCCUCCgGGaGCUGGc -3'
miRNA:   3'- -UCGCGUGa-----CCaCGGGGGgCCaCGGCC- -5'
21457 5' -64.8 NC_004812.1 + 17186 0.66 0.515567
Target:  5'- gGGCcaGCACcGGccGCCCCggugucguucgcggCCGGUGCCGc -3'
miRNA:   3'- -UCG--CGUGaCCa-CGGGG--------------GGCCACGGCc -5'
21457 5' -64.8 NC_004812.1 + 18829 0.68 0.389538
Target:  5'- cGGCGgGCggcGGUugcgcGCCgCCCGGUGgCGGu -3'
miRNA:   3'- -UCGCgUGa--CCA-----CGGgGGGCCACgGCC- -5'
21457 5' -64.8 NC_004812.1 + 19577 0.67 0.455743
Target:  5'- cGCGCACUggGGUGUgUCCUGGaucGCCGc -3'
miRNA:   3'- uCGCGUGA--CCACGgGGGGCCa--CGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.