miRNA display CGI

Results 1 - 20 of 1571 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21458	3'	-66.8	NC_004812.1	+	39858	0.66	0.425787
	Target:  5'- gGgGGGCCGgGGgCuC-CGCCaUGGCGCg -3' miRNA:   3'- -CgCCCGGCgUCgGuGcGCGG-GCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	98723	0.66	0.425787
	Target:  5'- cGCgGGGUCGUucucgcgcgggGGCaGCGCcCCCGGCGg -3' miRNA:   3'- -CG-CCCGGCG-----------UCGgUGCGcGGGCCGCg -5'
21458	3'	-66.8	NC_004812.1	+	131141	0.66	0.430728
	Target:  5'- -gGGGCCGCGGCauggucucuuccucCcCGCGUCCgccggggGGCGUc -3' miRNA:   3'- cgCCCGGCGUCG--------------GuGCGCGGG-------CCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	128306	0.66	0.424967
	Target:  5'- -aGGGCagguagaCGUGGCgGCGCGCgaCGGCGg -3' miRNA:   3'- cgCCCG-------GCGUCGgUGCGCGg-GCCGCg -5'
21458	3'	-66.8	NC_004812.1	+	114297	0.66	0.425787
	Target:  5'- cCGGGCUGCGGgCGCGaaauGacaUCGGCGUc -3' miRNA:   3'- cGCCCGGCGUCgGUGCg---Cg--GGCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	73053	0.66	0.424967
	Target:  5'- cCGGGUCGCugcgcagGGCCACGaCGaCgGGgGCg -3' miRNA:   3'- cGCCCGGCG-------UCGGUGC-GCgGgCCgCG- -5'
21458	3'	-66.8	NC_004812.1	+	49225	0.66	0.425787
	Target:  5'- gGCGGuGCCGUccgaGGCgAUcgcgcgggggGCGUCCGGgGCc -3' miRNA:   3'- -CGCC-CGGCG----UCGgUG----------CGCGGGCCgCG- -5'
21458	3'	-66.8	NC_004812.1	+	128808	0.66	0.425787
	Target:  5'- cGCGGGUCGaaggcgagcGCgGCGCGCCaGGCc- -3' miRNA:   3'- -CGCCCGGCgu-------CGgUGCGCGGgCCGcg -5'
21458	3'	-66.8	NC_004812.1	+	154456	0.66	0.425787
	Target:  5'- -gGuGGCCGCcGCCGCGagcccCGCCCgcGGgGCc -3' miRNA:   3'- cgC-CCGGCGuCGGUGC-----GCGGG--CCgCG- -5'
21458	3'	-66.8	NC_004812.1	+	31826	0.66	0.425787
	Target:  5'- aGUGGuGCCGCGGgaCCA-GCGagaCCGaGCGCc -3' miRNA:   3'- -CGCC-CGGCGUC--GGUgCGCg--GGC-CGCG- -5'
21458	3'	-66.8	NC_004812.1	+	151251	0.66	0.43321
	Target:  5'- uGUGGGUcaucgaCGCcGCCGCGCcCCCgccgaccccgggcGGCGCc -3' miRNA:   3'- -CGCCCG------GCGuCGGUGCGcGGG-------------CCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	115732	0.66	0.424967
	Target:  5'- -aGGcGCCGgAGUCACagaggcgaaagcgGCGCCUGGCa- -3' miRNA:   3'- cgCC-CGGCgUCGGUG-------------CGCGGGCCGcg -5'
21458	3'	-66.8	NC_004812.1	+	69513	0.66	0.425787
	Target:  5'- -gGGGUCGagacggaGGCCGcCGgGUCCGGcCGCc -3' miRNA:   3'- cgCCCGGCg------UCGGU-GCgCGGGCC-GCG- -5'
21458	3'	-66.8	NC_004812.1	+	101202	0.66	0.425787
	Target:  5'- -gGGGCCaGgGGCCcCGCGgCCgccagcaggGGCGCc -3' miRNA:   3'- cgCCCGG-CgUCGGuGCGCgGG---------CCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	126701	0.66	0.425787
	Target:  5'- cGCcgucGCCGCcGCCACcaCGCCCGGCcCg -3' miRNA:   3'- -CGcc--CGGCGuCGGUGc-GCGGGCCGcG- -5'
21458	3'	-66.8	NC_004812.1	+	93103	0.66	0.425787
	Target:  5'- aGCGGGCgcuuCGCGGUguCGgGCggCGGCGUc -3' miRNA:   3'- -CGCCCG----GCGUCGguGCgCGg-GCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	135224	0.66	0.47664
	Target:  5'- gGCGagacGGCCGCGGCgcggagcuCGCGCgucuacGCCCGGUu- -3' miRNA:   3'- -CGC----CCGGCGUCG--------GUGCG------CGGGCCGcg -5'
21458	3'	-66.8	NC_004812.1	+	46443	0.66	0.425787
	Target:  5'- cUGGGCgcuggCGCugGGCCAgGCGCUCuGCGUg -3' miRNA:   3'- cGCCCG-----GCG--UCGGUgCGCGGGcCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	144304	0.66	0.425787
	Target:  5'- uGCGGGUCGCugaGGCCGuCGUggguuucgcuccGCCCccccgggcaGGUGCu -3' miRNA:   3'- -CGCCCGGCG---UCGGU-GCG------------CGGG---------CCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	108589	0.66	0.422512
	Target:  5'- uCGGGCagCGCGGCCuaaccacgcucuuCGUGCaCCacgaGGCGCg -3' miRNA:   3'- cGCCCG--GCGUCGGu------------GCGCG-GG----CCGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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