miRNA display CGI


Results 1 - 20 of 1571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21458 3' -66.8 NC_004812.1 + 46 0.82 0.035508
Target:  5'- gGCGGGCCGCGGgCGCgGCGgCgCGGCGCc -3'
miRNA:   3'- -CGCCCGGCGUCgGUG-CGCgG-GCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 93 0.73 0.175455
Target:  5'- gGCGGGCuCcCGGCCccgcGCGCGcCCCGGCcCg -3'
miRNA:   3'- -CGCCCG-GcGUCGG----UGCGC-GGGCCGcG- -5'
21458 3' -66.8 NC_004812.1 + 97 0.72 0.186834
Target:  5'- aCGGGCCGgGGCgCGCGCggggccgggagcccGCCCGGgaGCc -3'
miRNA:   3'- cGCCCGGCgUCG-GUGCG--------------CGGGCCg-CG- -5'
21458 3' -66.8 NC_004812.1 + 146 0.77 0.089518
Target:  5'- cGUGGcGCCGC-GCCGcCGCGCCCGcggcccgccGCGCg -3'
miRNA:   3'- -CGCC-CGGCGuCGGU-GCGCGGGC---------CGCG- -5'
21458 3' -66.8 NC_004812.1 + 212 0.66 0.45082
Target:  5'- -aGGGCCcgGGUCGCGCaGcCCCGGCccccGCg -3'
miRNA:   3'- cgCCCGGcgUCGGUGCG-C-GGGCCG----CG- -5'
21458 3' -66.8 NC_004812.1 + 285 0.68 0.363286
Target:  5'- cGCGcuCCGCcGCCGuccggcCGCGCCCGagaGCGCg -3'
miRNA:   3'- -CGCccGGCGuCGGU------GCGCGGGC---CGCG- -5'
21458 3' -66.8 NC_004812.1 + 392 0.72 0.198859
Target:  5'- cGCGGcGCCccgccccccacgcgcGCAgGCCuucCGCGCgCGGCGCu -3'
miRNA:   3'- -CGCC-CGG---------------CGU-CGGu--GCGCGgGCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 447 0.72 0.206299
Target:  5'- cGCGcGGCCcCGGucCCGCGCGUCCcGCGCc -3'
miRNA:   3'- -CGC-CCGGcGUC--GGUGCGCGGGcCGCG- -5'
21458 3' -66.8 NC_004812.1 + 461 0.74 0.138525
Target:  5'- cCGGGCCGC--CgGCGCGCCUGcGUGCg -3'
miRNA:   3'- cGCCCGGCGucGgUGCGCGGGC-CGCG- -5'
21458 3' -66.8 NC_004812.1 + 509 0.78 0.077207
Target:  5'- aCGGccGCCGCGGCCgggGCGgGCCCGcGCGCc -3'
miRNA:   3'- cGCC--CGGCGUCGG---UGCgCGGGC-CGCG- -5'
21458 3' -66.8 NC_004812.1 + 550 0.69 0.320085
Target:  5'- gGCGGcGaCGC-GCCGCGCGacgcccgcccgucCCgCGGCGCg -3'
miRNA:   3'- -CGCC-CgGCGuCGGUGCGC-------------GG-GCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 569 0.75 0.11993
Target:  5'- cGCGcGGCCGCguggAGCCGCGgGCgCGGCu- -3'
miRNA:   3'- -CGC-CCGGCG----UCGGUGCgCGgGCCGcg -5'
21458 3' -66.8 NC_004812.1 + 632 0.66 0.421696
Target:  5'- cGCGGGCUGCAaccccgaggcucugcGUCcuuccgccccagguuCGCacCCCGGCGCu -3'
miRNA:   3'- -CGCCCGGCGU---------------CGGu--------------GCGc-GGGCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 698 0.69 0.288255
Target:  5'- cCGGGuCCGgAGCUccgucgGCGUcgGCgCCGGCGCg -3'
miRNA:   3'- cGCCC-GGCgUCGG------UGCG--CG-GGCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 707 0.68 0.363286
Target:  5'- uCGGcGCgGCAGCC-CGgGCgCCGGCc- -3'
miRNA:   3'- cGCC-CGgCGUCGGuGCgCG-GGCCGcg -5'
21458 3' -66.8 NC_004812.1 + 750 0.66 0.459343
Target:  5'- ---cGCCGCGcgcGCCuCGCcuCCCGGCGCc -3'
miRNA:   3'- cgccCGGCGU---CGGuGCGc-GGGCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 794 0.74 0.13205
Target:  5'- aUGGGCCGCcgcccccGCCGC-CGCCCGGC-Cg -3'
miRNA:   3'- cGCCCGGCGu------CGGUGcGCGGGCCGcG- -5'
21458 3' -66.8 NC_004812.1 + 847 0.76 0.102924
Target:  5'- -aGGGCCccgcgcguguccccGCGGCCGCGagcccCGCCCGcGCGCg -3'
miRNA:   3'- cgCCCGG--------------CGUCGGUGC-----GCGGGC-CGCG- -5'
21458 3' -66.8 NC_004812.1 + 928 0.69 0.300938
Target:  5'- cGCGcGCCGagcccGCCGCGCGCucCCGGCuGUg -3'
miRNA:   3'- -CGCcCGGCgu---CGGUGCGCG--GGCCG-CG- -5'
21458 3' -66.8 NC_004812.1 + 1012 0.74 0.13205
Target:  5'- --cGGCCGgGGCCGCGCccccgcgaggGCCCGGcCGCc -3'
miRNA:   3'- cgcCCGGCgUCGGUGCG----------CGGGCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.