miRNA display CGI


Results 1 - 20 of 1571 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21458 3' -66.8 NC_004812.1 + 143084 0.8 0.050915
Target:  5'- aCGGGCCGUgcgacccGGCCGucacgccgugggcccCGCGCCUGGCGCu -3'
miRNA:   3'- cGCCCGGCG-------UCGGU---------------GCGCGGGCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 127912 0.82 0.038209
Target:  5'- aCGGGCCGCAGCgGCGCGgccagccCCCaGCGCg -3'
miRNA:   3'- cGCCCGGCGUCGgUGCGC-------GGGcCGCG- -5'
21458 3' -66.8 NC_004812.1 + 73414 0.81 0.042055
Target:  5'- cGCGGccgccgcgccucccGCCGCgagcuccggGGCCGCGCGCCaCGGCGCc -3'
miRNA:   3'- -CGCC--------------CGGCG---------UCGGUGCGCGG-GCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 100668 0.81 0.042374
Target:  5'- cCGGGCCuCGGCguCGgGCCCGGCGCu -3'
miRNA:   3'- cGCCCGGcGUCGguGCgCGGGCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 125143 0.81 0.042374
Target:  5'- cGCGGcuccaCGCGGCCGCGCGCgCCGGgGCg -3'
miRNA:   3'- -CGCCcg---GCGUCGGUGCGCG-GGCCgCG- -5'
21458 3' -66.8 NC_004812.1 + 53354 0.81 0.043456
Target:  5'- -gGGGUCGCcGCCGCGuCGCCCGGcCGCc -3'
miRNA:   3'- cgCCCGGCGuCGGUGC-GCGGGCC-GCG- -5'
21458 3' -66.8 NC_004812.1 + 124041 0.81 0.044564
Target:  5'- gGCGGGCCGCGgcGCCGCG-GCCaacgggggagCGGCGCg -3'
miRNA:   3'- -CGCCCGGCGU--CGGUGCgCGG----------GCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 65074 0.81 0.047338
Target:  5'- gGCGGccGCCGCcgcccuGGCCGCGCGCCCcgcggaggaguggcuGGCGCg -3'
miRNA:   3'- -CGCC--CGGCG------UCGGUGCGCGGG---------------CCGCG- -5'
21458 3' -66.8 NC_004812.1 + 7920 0.8 0.04928
Target:  5'- cGgGGGCUGCGG-CGCGCG-CCGGCGCg -3'
miRNA:   3'- -CgCCCGGCGUCgGUGCGCgGGCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 156456 0.82 0.035508
Target:  5'- gGCGGGCCGCGGgCGCgGCGgCgCGGCGCc -3'
miRNA:   3'- -CGCCCGGCGUCgGUG-CGCgG-GCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 46 0.82 0.035508
Target:  5'- gGCGGGCCGCGGgCGCgGCGgCgCGGCGCc -3'
miRNA:   3'- -CGCCCGGCGUCgGUG-CGCgG-GCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 116503 0.82 0.035508
Target:  5'- cGgGGGUCGCGGacggaCGCGCGCCCGGcCGCc -3'
miRNA:   3'- -CgCCCGGCGUCg----GUGCGCGGGCC-GCG- -5'
21458 3' -66.8 NC_004812.1 + 129002 0.9 0.009426
Target:  5'- gGCGGGCCGCGGgCGCGgGCCCGGgGCc -3'
miRNA:   3'- -CGCCCGGCGUCgGUGCgCGGGCCgCG- -5'
21458 3' -66.8 NC_004812.1 + 152975 0.89 0.011871
Target:  5'- cGCGGGCgGC-GCCGCGCGCCCgccGGCGCg -3'
miRNA:   3'- -CGCCCGgCGuCGGUGCGCGGG---CCGCG- -5'
21458 3' -66.8 NC_004812.1 + 97323 0.87 0.015689
Target:  5'- gGCGGGCgGguGCCGCGCGCCCGcgacccugaucccGCGCa -3'
miRNA:   3'- -CGCCCGgCguCGGUGCGCGGGC-------------CGCG- -5'
21458 3' -66.8 NC_004812.1 + 121846 0.86 0.018808
Target:  5'- uGCGGGCCGCggcGGCCGCgGCGaCCaCGGCGCa -3'
miRNA:   3'- -CGCCCGGCG---UCGGUG-CGC-GG-GCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 8323 0.84 0.027556
Target:  5'- aGCGGGCCgGCGccgccGCCGCGCuGCCgGGCGCg -3'
miRNA:   3'- -CGCCCGG-CGU-----CGGUGCG-CGGgCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 19609 0.84 0.027556
Target:  5'- gGCGGGCCcacgcCAGCCGCGCGUCCGGUcucGCg -3'
miRNA:   3'- -CGCCCGGc----GUCGGUGCGCGGGCCG---CG- -5'
21458 3' -66.8 NC_004812.1 + 127854 0.83 0.028992
Target:  5'- cGCGGGCgGCagGGCguCGgGCCCGGCGCg -3'
miRNA:   3'- -CGCCCGgCG--UCGguGCgCGGGCCGCG- -5'
21458 3' -66.8 NC_004812.1 + 98626 0.83 0.030501
Target:  5'- cGCGGccGUCGCGGCCGCgcuGCGCCCGGgCGCg -3'
miRNA:   3'- -CGCC--CGGCGUCGGUG---CGCGGGCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.