miRNA display CGI

Results 1 - 20 of 1571 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21458	3'	-66.8	NC_004812.1	+	86490	1.11	0.000271
	Target:  5'- cGCGGGCCGCAGCCACGCGCCCGGCGCc -3' miRNA:   3'- -CGCCCGGCGUCGGUGCGCGGGCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	114675	0.93	0.005788
	Target:  5'- aGCGGGCCGguGCCggGCGCGCCCGGgGCc -3' miRNA:   3'- -CGCCCGGCguCGG--UGCGCGGGCCgCG- -5'
21458	3'	-66.8	NC_004812.1	+	129002	0.9	0.009426
	Target:  5'- gGCGGGCCGCGGgCGCGgGCCCGGgGCc -3' miRNA:   3'- -CGCCCGGCGUCgGUGCgCGGGCCgCG- -5'
21458	3'	-66.8	NC_004812.1	+	3494	0.9	0.009426
	Target:  5'- gGCGGGCCGCGGgCGCGgGCCCGGgGCc -3' miRNA:   3'- -CGCCCGGCGUCgGUGCgCGGGCCgCG- -5'
21458	3'	-66.8	NC_004812.1	+	152975	0.89	0.011871
	Target:  5'- cGCGGGCgGC-GCCGCGCGCCCgccGGCGCg -3' miRNA:   3'- -CGCCCGgCGuCGGUGCGCGGG---CCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	27467	0.89	0.011871
	Target:  5'- cGCGGGCgGC-GCCGCGCGCCCgccGGCGCg -3' miRNA:   3'- -CGCCCGgCGuCGGUGCGCGGG---CCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	62340	0.88	0.014567
	Target:  5'- cCGGGCCGCGG-CGCGCGCCCgcGGCGCg -3' miRNA:   3'- cGCCCGGCGUCgGUGCGCGGG--CCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	97323	0.87	0.015689
	Target:  5'- gGCGGGCgGguGCCGCGCGCCCGcgacccugaucccGCGCa -3' miRNA:   3'- -CGCCCGgCguCGGUGCGCGGGC-------------CGCG- -5'
21458	3'	-66.8	NC_004812.1	+	124057	0.87	0.016553
	Target:  5'- gGgGGGCCGCGGCCAgcUGCGCCCGcGUGCu -3' miRNA:   3'- -CgCCCGGCGUCGGU--GCGCGGGC-CGCG- -5'
21458	3'	-66.8	NC_004812.1	+	121846	0.86	0.018808
	Target:  5'- uGCGGGCCGCggcGGCCGCgGCGaCCaCGGCGCa -3' miRNA:   3'- -CGCCCGGCG---UCGGUG-CGC-GG-GCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	152747	0.86	0.018808
	Target:  5'- uGCGGGCCGCggcGGCCGCgGCGaCCaCGGCGCa -3' miRNA:   3'- -CGCCCGGCG---UCGGUG-CGC-GG-GCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	74538	0.86	0.019641
	Target:  5'- cGCGcccucgauccuccuGGCCGCAGCCACGCGCauucgcuuuCCGGCGCc -3' miRNA:   3'- -CGC--------------CCGGCGUCGGUGCGCG---------GGCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	8323	0.84	0.027556
	Target:  5'- aGCGGGCCgGCGccgccGCCGCGCuGCCgGGCGCg -3' miRNA:   3'- -CGCCCGG-CGU-----CGGUGCG-CGGgCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	39224	0.84	0.027556
	Target:  5'- aGCGGGCCgGCGccgccGCCGCGCuGCCgGGCGCg -3' miRNA:   3'- -CGCCCGG-CGU-----CGGUGCG-CGGgCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	19609	0.84	0.027556
	Target:  5'- gGCGGGCCcacgcCAGCCGCGCGUCCGGUcucGCg -3' miRNA:   3'- -CGCCCGGc----GUCGGUGCGCGGGCCG---CG- -5'
21458	3'	-66.8	NC_004812.1	+	127854	0.83	0.028992
	Target:  5'- cGCGGGCgGCagGGCguCGgGCCCGGCGCg -3' miRNA:   3'- -CGCCCGgCG--UCGguGCgCGGGCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	2346	0.83	0.028992
	Target:  5'- cGCGGGCgGCagGGCguCGgGCCCGGCGCg -3' miRNA:   3'- -CGCCCGgCG--UCGguGCgCGGGCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	108432	0.83	0.029288
	Target:  5'- uGCaGGGCCGCguucuccagcgccgcGGCCGC-CGCCCGGCGCc -3' miRNA:   3'- -CG-CCCGGCG---------------UCGGUGcGCGGGCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	88406	0.83	0.029737
	Target:  5'- gGCcGGCCGCgcgcGGCCGgGCGUCCGGCGCg -3' miRNA:   3'- -CGcCCGGCG----UCGGUgCGCGGGCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	98626	0.83	0.030501
	Target:  5'- cGCGGccGUCGCGGCCGCgcuGCGCCCGGgCGCg -3' miRNA:   3'- -CGCC--CGGCGUCGGUG---CGCGGGCC-GCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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