miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21465 5' -59.5 NC_004812.1 + 46257 0.66 0.763504
Target:  5'- uGUCcUCGAU---CUCGGGGCGCgGCa -3'
miRNA:   3'- -CAGuGGCUGuucGAGCCCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 58958 0.66 0.771855
Target:  5'- --uGCCGugAGGCUgGGGGCcgagaugGCgGCg -3'
miRNA:   3'- cagUGGCugUUCGAgCCCCG-------CGaCGa -5'
21465 5' -59.5 NC_004812.1 + 121740 0.66 0.754118
Target:  5'- --gGCCGGCGcgcGGCggGGGGCGCcggGCc -3'
miRNA:   3'- cagUGGCUGU---UCGagCCCCGCGa--CGa -5'
21465 5' -59.5 NC_004812.1 + 145720 0.66 0.73408
Target:  5'- -gCGCUGACGgacgcccgaacgcGGCgaccCGGGGCGCgcggGCg -3'
miRNA:   3'- caGUGGCUGU-------------UCGa---GCCCCGCGa---CGa -5'
21465 5' -59.5 NC_004812.1 + 79403 0.66 0.763504
Target:  5'- -gCGCCaGCuGGCUCGGGGgcCGCcGCUu -3'
miRNA:   3'- caGUGGcUGuUCGAGCCCC--GCGaCGA- -5'
21465 5' -59.5 NC_004812.1 + 50066 0.66 0.754118
Target:  5'- -cCACCGcgcccgcuGCGAGg-UGGGGCGCgUGCUg -3'
miRNA:   3'- caGUGGC--------UGUUCgaGCCCCGCG-ACGA- -5'
21465 5' -59.5 NC_004812.1 + 72086 0.66 0.754118
Target:  5'- uUCGCCGccccCGAGCUCGuuuGGGCGgggGCUg -3'
miRNA:   3'- cAGUGGCu---GUUCGAGC---CCCGCga-CGA- -5'
21465 5' -59.5 NC_004812.1 + 7935 0.66 0.735043
Target:  5'- -gCGCCGGCGcGGC-CGGGGgGC-GCg -3'
miRNA:   3'- caGUGGCUGU-UCGaGCCCCgCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 5806 0.66 0.735043
Target:  5'- -gCugCGG--GGCUgCGGGGCGCgGCg -3'
miRNA:   3'- caGugGCUguUCGA-GCCCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 35830 0.66 0.743674
Target:  5'- cGUCGCCGucgcgguacuugcGCAgcAGCgCGGGGuCGCUgGCg -3'
miRNA:   3'- -CAGUGGC-------------UGU--UCGaGCCCC-GCGA-CGa -5'
21465 5' -59.5 NC_004812.1 + 68164 0.66 0.772777
Target:  5'- cUCcCCGGCAGGgUCGGcGGcCGCggGCg -3'
miRNA:   3'- cAGuGGCUGUUCgAGCC-CC-GCGa-CGa -5'
21465 5' -59.5 NC_004812.1 + 32824 0.66 0.763504
Target:  5'- -gCGCgGACGAGUgggggCGGGGgGCgGCc -3'
miRNA:   3'- caGUGgCUGUUCGa----GCCCCgCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 154748 0.66 0.725372
Target:  5'- gGUCGCgGAgGAGCgggcCGGGGCuGC-GCg -3'
miRNA:   3'- -CAGUGgCUgUUCGa---GCCCCG-CGaCGa -5'
21465 5' -59.5 NC_004812.1 + 148234 0.66 0.744628
Target:  5'- gGUgGCCGGCGgggggAGCagGGGGCGUucgggaUGCg -3'
miRNA:   3'- -CAgUGGCUGU-----UCGagCCCCGCG------ACGa -5'
21465 5' -59.5 NC_004812.1 + 125012 0.66 0.743674
Target:  5'- -aCGCCGACgGAGCUccggaccCGGGGaCGC-GCUc -3'
miRNA:   3'- caGUGGCUG-UUCGA-------GCCCC-GCGaCGA- -5'
21465 5' -59.5 NC_004812.1 + 31665 0.66 0.772777
Target:  5'- --gGCCGGgGAcagccGCUgGGGGCGCaGCUc -3'
miRNA:   3'- cagUGGCUgUU-----CGAgCCCCGCGaCGA- -5'
21465 5' -59.5 NC_004812.1 + 79818 0.66 0.772777
Target:  5'- -gCGCCGAC---CUCuGGGgGCUGCUg -3'
miRNA:   3'- caGUGGCUGuucGAGcCCCgCGACGA- -5'
21465 5' -59.5 NC_004812.1 + 113128 0.66 0.751282
Target:  5'- -gCGCUGGCGgucguucccccgaaGGCUcCGGGGCGCgagggucgGCg -3'
miRNA:   3'- caGUGGCUGU--------------UCGA-GCCCCGCGa-------CGa -5'
21465 5' -59.5 NC_004812.1 + 79149 0.66 0.763504
Target:  5'- --gGCUGGCGcGCUUGGGGUGgUGUc -3'
miRNA:   3'- cagUGGCUGUuCGAGCCCCGCgACGa -5'
21465 5' -59.5 NC_004812.1 + 72851 0.66 0.725372
Target:  5'- -cCGCCGGCGaucAGCgcggacagCGcGGGCaGCUGCg -3'
miRNA:   3'- caGUGGCUGU---UCGa-------GC-CCCG-CGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.