miRNA display CGI


Results 1 - 20 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21465 5' -59.5 NC_004812.1 + 82504 1.08 0.00154
Target:  5'- cGUCACCGACAAGCUCGGGGCGCUGCUg -3'
miRNA:   3'- -CAGUGGCUGUUCGAGCCCCGCGACGA- -5'
21465 5' -59.5 NC_004812.1 + 101023 0.86 0.051235
Target:  5'- cUCGCUGGCGAGCcUGGGGCGCUGCg -3'
miRNA:   3'- cAGUGGCUGUUCGaGCCCCGCGACGa -5'
21465 5' -59.5 NC_004812.1 + 47618 0.79 0.149138
Target:  5'- -gCGCCGACGGGCUCGGGGCaaaGCcGCc -3'
miRNA:   3'- caGUGGCUGUUCGAGCCCCG---CGaCGa -5'
21465 5' -59.5 NC_004812.1 + 47722 0.76 0.226761
Target:  5'- --gGCCGGCGcgaGGCggCGGGGUGCUGCa -3'
miRNA:   3'- cagUGGCUGU---UCGa-GCCCCGCGACGa -5'
21465 5' -59.5 NC_004812.1 + 155685 0.76 0.237867
Target:  5'- -gCGCCGGCGGGCUCGGcGcGCGCgaggGCg -3'
miRNA:   3'- caGUGGCUGUUCGAGCC-C-CGCGa---CGa -5'
21465 5' -59.5 NC_004812.1 + 2004 0.76 0.243588
Target:  5'- -cCGCCGGCGGucGCUCGGGGCGCcgacgccgGCg -3'
miRNA:   3'- caGUGGCUGUU--CGAGCCCCGCGa-------CGa -5'
21465 5' -59.5 NC_004812.1 + 127513 0.76 0.243588
Target:  5'- -cCGCCGGCGGucGCUCGGGGCGCcgacgccgGCg -3'
miRNA:   3'- caGUGGCUGUU--CGAGCCCCGCGa-------CGa -5'
21465 5' -59.5 NC_004812.1 + 135169 0.75 0.276479
Target:  5'- gGUCACCGGCcuccucugccgccGCUUcaaGGGGCGCUGCg -3'
miRNA:   3'- -CAGUGGCUGuu-----------CGAG---CCCCGCGACGa -5'
21465 5' -59.5 NC_004812.1 + 32329 0.74 0.300317
Target:  5'- cGUCACCGGCcgcuAGCUCuccggagacgGGGGCGCcGCc -3'
miRNA:   3'- -CAGUGGCUGu---UCGAG----------CCCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 49736 0.74 0.307215
Target:  5'- --gGCCGACGGGgUCGGGGuCGCgGCg -3'
miRNA:   3'- cagUGGCUGUUCgAGCCCC-GCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 7904 0.74 0.307215
Target:  5'- gGUCGCCcGCAGGUgUCGGGG-GCUGCg -3'
miRNA:   3'- -CAGUGGcUGUUCG-AGCCCCgCGACGa -5'
21465 5' -59.5 NC_004812.1 + 38805 0.74 0.307215
Target:  5'- gGUCGCCcGCAGGUgUCGGGG-GCUGCg -3'
miRNA:   3'- -CAGUGGcUGUUCG-AGCCCCgCGACGa -5'
21465 5' -59.5 NC_004812.1 + 21152 0.73 0.358093
Target:  5'- uGUCGCCGGCGcgcAGCUCGcggaggaggcgcuGGGCGCggaggGCg -3'
miRNA:   3'- -CAGUGGCUGU---UCGAGC-------------CCCGCGa----CGa -5'
21465 5' -59.5 NC_004812.1 + 60855 0.73 0.358872
Target:  5'- --gGCgCGuCAGGUUCGGGGCGCgcgGCUg -3'
miRNA:   3'- cagUG-GCuGUUCGAGCCCCGCGa--CGA- -5'
21465 5' -59.5 NC_004812.1 + 77232 0.73 0.358872
Target:  5'- --gGCCGACGcgggGGUgUGGGGCGCUGCc -3'
miRNA:   3'- cagUGGCUGU----UCGaGCCCCGCGACGa -5'
21465 5' -59.5 NC_004812.1 + 95499 0.73 0.36673
Target:  5'- -gCGCCGGCGcGCcgCGGGGCGCcGCc -3'
miRNA:   3'- caGUGGCUGUuCGa-GCCCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 13120 0.73 0.36673
Target:  5'- cUCGCCGcgucCAGGC-CGGGGCGgaGCa -3'
miRNA:   3'- cAGUGGCu---GUUCGaGCCCCGCgaCGa -5'
21465 5' -59.5 NC_004812.1 + 105796 0.73 0.374705
Target:  5'- cGUCGCCGGgGGGCUUGGGG-GUggggGCUc -3'
miRNA:   3'- -CAGUGGCUgUUCGAGCCCCgCGa---CGA- -5'
21465 5' -59.5 NC_004812.1 + 30103 0.72 0.399326
Target:  5'- aGUCGgCGugGGGCUgCGGGGCGCa--- -3'
miRNA:   3'- -CAGUgGCugUUCGA-GCCCCGCGacga -5'
21465 5' -59.5 NC_004812.1 + 151330 0.72 0.40776
Target:  5'- gGUCGCCGAgucggcCGAGCgCGGGGcCGCgGCg -3'
miRNA:   3'- -CAGUGGCU------GUUCGaGCCCC-GCGaCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.