miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21465 5' -59.5 NC_004812.1 + 40 0.69 0.565745
Target:  5'- -aCGCgCGGCGGGC-CGcGGGCGCgGCg -3'
miRNA:   3'- caGUG-GCUGUUCGaGC-CCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 87 0.69 0.595656
Target:  5'- cUCGCgaggGACGGGC-CGGGGCGC-GCg -3'
miRNA:   3'- cAGUGg---CUGUUCGaGCCCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 734 0.71 0.479018
Target:  5'- gGUCGCCGGCGGGggUGGGG-GCgGCg -3'
miRNA:   3'- -CAGUGGCUGUUCgaGCCCCgCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 1472 0.67 0.685996
Target:  5'- -aCGCCGGCGuccucGGCgggCGGcGGCGgaGCg -3'
miRNA:   3'- caGUGGCUGU-----UCGa--GCC-CCGCgaCGa -5'
21465 5' -59.5 NC_004812.1 + 2004 0.76 0.243588
Target:  5'- -cCGCCGGCGGucGCUCGGGGCGCcgacgccgGCg -3'
miRNA:   3'- caGUGGCUGUU--CGAGCCCCGCGa-------CGa -5'
21465 5' -59.5 NC_004812.1 + 2460 0.68 0.645928
Target:  5'- cUCGCCGcgGCGgaAGUcCGGGGCGCcgGCg -3'
miRNA:   3'- cAGUGGC--UGU--UCGaGCCCCGCGa-CGa -5'
21465 5' -59.5 NC_004812.1 + 2499 0.69 0.565745
Target:  5'- cUCGCgGGCGGGCgagUCGGcGGCGCgGCc -3'
miRNA:   3'- cAGUGgCUGUUCG---AGCC-CCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 3359 0.68 0.605686
Target:  5'- cUCGgCGACGAcGCgCGGGGCGCaGUa -3'
miRNA:   3'- cAGUgGCUGUU-CGaGCCCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 3485 0.67 0.715623
Target:  5'- cGUCAgCgCGGCGGGC-CGcGGGCGCggGCc -3'
miRNA:   3'- -CAGU-G-GCUGUUCGaGC-CCCGCGa-CGa -5'
21465 5' -59.5 NC_004812.1 + 3568 0.67 0.666015
Target:  5'- -gCGCCGGCGGGCaggCGGcGGCgGCgGCg -3'
miRNA:   3'- caGUGGCUGUUCGa--GCC-CCG-CGaCGa -5'
21465 5' -59.5 NC_004812.1 + 3631 0.68 0.655981
Target:  5'- -gCGCCGGCGGGCgCGcGGCGCcGCc -3'
miRNA:   3'- caGUGGCUGUUCGaGCcCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 3658 0.67 0.695926
Target:  5'- cGUCugCGuCGgccAGCagGGGGCGCagGCUc -3'
miRNA:   3'- -CAGugGCuGU---UCGagCCCCGCGa-CGA- -5'
21465 5' -59.5 NC_004812.1 + 4711 0.69 0.54602
Target:  5'- -cCGCCGcGCGAGgaCGGGGCGUgUGCc -3'
miRNA:   3'- caGUGGC-UGUUCgaGCCCCGCG-ACGa -5'
21465 5' -59.5 NC_004812.1 + 5228 0.66 0.772777
Target:  5'- --aGCCGGCGucGGCcucgcggccgUCGGGGCGC-GCc -3'
miRNA:   3'- cagUGGCUGU--UCG----------AGCCCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 5806 0.66 0.735043
Target:  5'- -gCugCGG--GGCUgCGGGGCGCgGCg -3'
miRNA:   3'- caGugGCUguUCGA-GCCCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 6187 0.68 0.655981
Target:  5'- gGUCGCgGA--GGCcCGGGGCGCccgGCg -3'
miRNA:   3'- -CAGUGgCUguUCGaGCCCCGCGa--CGa -5'
21465 5' -59.5 NC_004812.1 + 7632 0.69 0.585651
Target:  5'- -aCGCgCGGCGgccgGGgUCGGGGCGCgaaGCUg -3'
miRNA:   3'- caGUG-GCUGU----UCgAGCCCCGCGa--CGA- -5'
21465 5' -59.5 NC_004812.1 + 7904 0.74 0.307215
Target:  5'- gGUCGCCcGCAGGUgUCGGGG-GCUGCg -3'
miRNA:   3'- -CAGUGGcUGUUCG-AGCCCCgCGACGa -5'
21465 5' -59.5 NC_004812.1 + 7935 0.66 0.735043
Target:  5'- -gCGCCGGCGcGGC-CGGGGgGC-GCg -3'
miRNA:   3'- caGUGGCUGU-UCGaGCCCCgCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 10865 0.67 0.676023
Target:  5'- --gACCGACGAGCcccccgaccCGcGGGCGCUGg- -3'
miRNA:   3'- cagUGGCUGUUCGa--------GC-CCCGCGACga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.